GBrowse Details

Vigan.01G002400.01

Basic Information:
Name: Vigan.01G002400.01
Multiple alignment
Variant Information
Position: Chr01:179229..181503 (+ strand)
Length: 2275
Functional Information:
Description: Similar to purple acid phosphatase 3-like. [XP_004503250.1, Cicer arietinum]
GO: Molecular Function: acid phosphatase activity (GO:0003993)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Acid phosphatase, type 5 (IPR024927)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.10,0.17,56.45,42.53,44.61,186.61,1.02,90.73
Automatic updates:
Name: NM_001254442 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max purple acid phosphatase 3-like (LOC100817359), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:179229..179532 (+ strand)
Length: 304
Type: five_prime_UTR
Position: Chr01:179533..179706 (+ strand)
Length: 174
Type: CDS
Position: Chr01:179947..180103 (+ strand)
Length: 157
Type: CDS
Position: Chr01:180217..180324 (+ strand)
Length: 108
Type: CDS
Position: Chr01:180390..180517 (+ strand)
Length: 128
Type: CDS
Position: Chr01:180618..180746 (+ strand)
Length: 129
Type: CDS
Position: Chr01:180837..180904 (+ strand)
Length: 68
Type: CDS
Position: Chr01:180988..181207 (+ strand)
Length: 220
Type: CDS
Position: Chr01:181208..181503 (+ strand)
Length: 296
Type: three_prime_UTR


>Vigan.01G002400.01
CTAATATGTG GGTCCACTGA GAACCTATTA TTAGTATGCC GGGCCAAAGT GTCATTGGAA CGAATAAGTT ATCTACGCTA
CTTTGACAAA AACGCTTGTT TCAGTGGGAT TTGCTTACGA TATTGTTAAA ACAGCTTTTA TGTAATTTTA CCTGTGCAAC
CAATATACAG TAAGTTCGTA CGCGACATCA TGTTAAGTCA CACAACTCTA CTATTATGTG ATAATATGCT CTTAAGATGC
AAGAATCTTT TTCTTTATTA CATAACAACA AAGTAAGGAG TTGAAGACAC CCACACACAA AAACATGGCT GGTTTGGGTG
TATGGATGAT GGCTTTCATT AGTCTGTGTT CTCTGAATGT ATCTGCTCTT CTCCAACGCC TACAGCACCC TGTCAAAGCG
GATGGATCAC TTAGTCTTGT GGTCATTGGA GACTGGGGAA GGAAAGGAAC GTACAACCAA TCAGAAGTTG CTGCTCAGAT
GGGAAGAGTT GCAGAAAAGT TAAATATCGA CTTTGTGATA TCCACCGGAG ACAATTTCTA CGACGATGGT TTGACTGGTG
TAGACGATCC AGCATTTGAA TTTTCCTTCT CAAAAGTTTA CACTGCCAAG AGCCTCCAAA AGCAGTGGTA TAATGTGTTG
GGAAACCACG ACTACAGGGG AGACGTGGAA GCACAACTGA ATCCAATCCT TCAGAAAATC GATCCGAGAT GGATCTGCAA
AAGATCATTC ATAGTTGATA CTGAAATTGC TGAGTTCTTC TTTGTCGATA CAACACCTTT TGTGGACAAG TATTTTCTTG
AGCCGAAGCA CCACAAGTAT GATTGGAGAG GAGTGCTTCC AAGGGAGAGA TATTTATCAA AGCTCTTAAA GGATCTGGAA
ATAGCATTAA AGGGTTCTTC TGCCAACTGG AAGATTGTTG TGGGGCATCA TCCCATAAGA AGCATAGGAC ACCATGGTGA
CACCCAAGAG CTCATAAGGC AGCTTCTGCC AATTCTTGAG GCAAATGATG TGGATATGTA CATTAATGGG CATGACCATT
GCTTGGAACA CATAATTAGC ACAAGCAGTC AAATCCAATT CTTAACCAGT GGTGGAGGTT CAAAGGCATG GAAAGGAGAC
ATCGATAAAA ATAGGAAAGA CGGCACAAAG TTTTACTATG ATGGACAAGG ATTTATGTCT GTGGAGCTCG AACAAACAAA
TGCAAAAGTT GTTTATTATG ATATTTTTGG CAAAGTTCTG CATGTTGTGA ATCTGTCGAA GGCGTTAGGT TCTGTCCATG
CCATATAGAA GAGACTAGTT CAGGAAAGCA CAAATTAAAG ATGAAAAGGA AAGATATCTA TCATATGTAA TGAAATGAAT
AAGAGTGACC AATGAAAGAT TACTGTCATT AATAATGAAA AAATATCAGA CACGGCATGC CCCAATAGAG GTCTGATATG
TGCCCTAAAT AGCTGAAGGT GACAGTGTAA TAATGGTTGA ATATTCAAAT ATCTTTTATT GCAGGAAGAA ATTGTAAGTG
ATGTTTCTTT TGATTTTGCA TATATGGGCT CATTACACCA ACTACGGGCT CATTACACCA AGTA

>Vigan.01G002400.01
ATGGCTGGTT TGGGTGTATG GATGATGGCT TTCATTAGTC TGTGTTCTCT GAATGTATCT GCTCTTCTCC AACGCCTACA
GCACCCTGTC AAAGCGGATG GATCACTTAG TCTTGTGGTC ATTGGAGACT GGGGAAGGAA AGGAACGTAC AACCAATCAG
AAGTTGCTGC TCAGATGGGA AGAGTTGCAG AAAAGTTAAA TATCGACTTT GTGATATCCA CCGGAGACAA TTTCTACGAC
GATGGTTTGA CTGGTGTAGA CGATCCAGCA TTTGAATTTT CCTTCTCAAA AGTTTACACT GCCAAGAGCC TCCAAAAGCA
GTGGTATAAT GTGTTGGGAA ACCACGACTA CAGGGGAGAC GTGGAAGCAC AACTGAATCC AATCCTTCAG AAAATCGATC
CGAGATGGAT CTGCAAAAGA TCATTCATAG TTGATACTGA AATTGCTGAG TTCTTCTTTG TCGATACAAC ACCTTTTGTG
GACAAGTATT TTCTTGAGCC GAAGCACCAC AAGTATGATT GGAGAGGAGT GCTTCCAAGG GAGAGATATT TATCAAAGCT
CTTAAAGGAT CTGGAAATAG CATTAAAGGG TTCTTCTGCC AACTGGAAGA TTGTTGTGGG GCATCATCCC ATAAGAAGCA
TAGGACACCA TGGTGACACC CAAGAGCTCA TAAGGCAGCT TCTGCCAATT CTTGAGGCAA ATGATGTGGA TATGTACATT
AATGGGCATG ACCATTGCTT GGAACACATA ATTAGCACAA GCAGTCAAAT CCAATTCTTA ACCAGTGGTG GAGGTTCAAA
GGCATGGAAA GGAGACATCG ATAAAAATAG GAAAGACGGC ACAAAGTTTT ACTATGATGG ACAAGGATTT ATGTCTGTGG
AGCTCGAACA AACAAATGCA AAAGTTGTTT ATTATGATAT TTTTGGCAAA GTTCTGCATG TTGTGAATCT GTCGAAGGCG
TTAGGTTCTG TCCATGCCAT ATAG

>Vigan.01G002400.01
MAGLGVWMMA FISLCSLNVS ALLQRLQHPV KADGSLSLVV IGDWGRKGTY NQSEVAAQMG RVAEKLNIDF VISTGDNFYD
DGLTGVDDPA FEFSFSKVYT AKSLQKQWYN VLGNHDYRGD VEAQLNPILQ KIDPRWICKR SFIVDTEIAE FFFVDTTPFV
DKYFLEPKHH KYDWRGVLPR ERYLSKLLKD LEIALKGSSA NWKIVVGHHP IRSIGHHGDT QELIRQLLPI LEANDVDMYI
NGHDHCLEHI ISTSSQIQFL TSGGGSKAWK GDIDKNRKDG TKFYYDGQGF MSVELEQTNA KVVYYDIFGK VLHVVNLSKA
LGSVHAI*