GBrowse Details

Vigan.01G008100.01

Basic Information:
Name: Vigan.01G008100.01
Multiple alignment
Variant Information
Position: Chr01:486600..491077 (- strand)
Length: 4478
Functional Information:
Description: Similar to Uncharacterized protein. [Q4JEZ6, Glycine max]
GO: Biological Process: protein glycosylation (GO:0006486)
Molecular Function: sialyltransferase activity (GO:0008373)
InterPro: Glycosyl transferase, family 29 (IPR001675)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.22,2.88,5.99,4.65,6.82,6.33,6.06,5.76
Arabidopsis thaliana homolog: AT3G48820.1
Automatic updates:
Name: NM_001251512 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sialyltransferase-like (STV2B), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:486600..486944 (- strand)
Length: 345
Type: three_prime_UTR
Position: Chr01:486945..487140 (- strand)
Length: 196
Type: CDS
Position: Chr01:487643..487752 (- strand)
Length: 110
Type: CDS
Position: Chr01:488006..488087 (- strand)
Length: 82
Type: CDS
Position: Chr01:488181..488335 (- strand)
Length: 155
Type: CDS
Position: Chr01:488421..488485 (- strand)
Length: 65
Type: CDS
Position: Chr01:488571..488661 (- strand)
Length: 91
Type: CDS
Position: Chr01:488752..488944 (- strand)
Length: 193
Type: CDS
Position: Chr01:489329..489429 (- strand)
Length: 101
Type: CDS
Position: Chr01:489635..489712 (- strand)
Length: 78
Type: CDS
Position: Chr01:489935..490024 (- strand)
Length: 90
Type: CDS
Position: Chr01:490588..490661 (- strand)
Length: 74
Type: CDS
Position: Chr01:490763..490856 (- strand)
Length: 94
Type: CDS
Position: Chr01:490857..491077 (- strand)
Length: 221
Type: five_prime_UTR


>Vigan.01G008100.01
CATAGTTCTA GCTTGTGCGA CAAGTCATGG AGTAAAAAGT AATTAAATTT CCCCAAAACC CAAAAGTTTA GTTTGAATAT
AATTACCCAA TAAAACGAAT TGAAGACGCA ATTAGCTTCA CAGAGGTAAA GATTTGAAAA TTGGAGTGTG TGGAGCAGAT
GTCGATACTA ATCAATCCAT AGATAAACCC CAAATCGATT TGTCGGCAAC TCAATAATCC GATGAGGGTT CTGCAACTCG
GTTTGTTTCT CGCTTTGGCA TGTGGATTTG CAGCCATTTC CATCTACATC ACCGGACTCT CGGATCCTTT TGTATATCCC
GGTTATCGCC TCACAGATGA AGACACCGAA GCATTGCTTT CGCTGCACGA CACTTTCCAG AAGTGTGTGA GTGCAAATGG
ACTTGGCCTA AAAGCAACTA GGGGCATTGA TTATTGCCAA ACCACAATAA ATTTCCCCAG TGACACTATC CCCAAATGGA
AAGATCCAAA AACTGGAGAA CTTGAAGCTC TGTCTTTTGA TTTTAATCTA TGTGAAGCTG TGGCATCATG GGAGCAGGTG
CGGAACAGCA CCACTATCCT CACCAAGGAA TTCATTGATT CTTTACCAAA TGGATGGGAG GAATATGCAT GGCGTAGGAT
CAATAAAGGA ATACAGCTCA ACCGCTGTGA GAATAAGACC TTGTGCATGG AGAAACTTTC ACTAGTTCTC CCCGAAACAC
CACCATACTT CCCTAGACAG TTTGGGCGCT GTGCTGTTAT TGGTAATTCA GGAGACCTCT TGAAAACAAA ATTTGGAAAC
GAGATAGATG GTTATGAAGT TGTCATTAGA GAAAATGGTG CTCCAATTGA GAATTACACT GATTATGTGG GTAGGAAAAG
CACATTTCGC CTTCTAAACC GAGGATCTGC TAAAGCGCTA GATAAAGTTG TAGAGTTAGA TGAACAAAGA AAAGAAGTGT
TGATAGTAAA AACAACAATT CATGATATCA TGAACAAAAT GATTCGGGAG GTTCCTATAA AAAATCCTGT GTACCTCATG
CTAGGTGCAT CCTTTGGCTC AGCAGCAAAA GGAACTGGAC TTAAGGCTCT TGAATTTGCT CTCTCTATGT GCGATTCAGT
GGATATGTAT GGTTTCACTG TAGATCCTGG TTATAAAGAA TGGACAAGGT ATTTCTCTGA ATCCCGTCAA GGCCATACCC
CATTGCATGG AAGAGCTTAC TATCAGATGA TGGAATGCTT GGGGCTTATC AAAATTCATT CTCCCATGCG AGCTGATCCT
AATCGTGTTG TAAAATGGGT TCCGAGCCAC CATATTATAA GAGCTGCTAG AATTGCATCG GAGAAATTAT TGAGGAGAGT
TGGAGGAGGA TCTGAAGATC CACTTGCTGT ATGCTCCATA ATTAGGAAGC AAGTAAAAAG AAATCTAAAT GCAGTTTCGA
AGCTCAGAAA GGCGGCACTT GATCATTTAA GGTATGTGAA GAGAACAACA ATGTATCCCT TAGAGCATAG TCCTGGACAT
GGGTCGCTTT GCACTGTACC ATCTGATTAA ACTGTACTTA GATTGTGCAG AAAAATCAAG GAAATTTATT TAGTTATTCT
CATTCTTTTC TTCTTTCTGT TTTGAAACCT TTAAAGGACT TAGATTGGTT AGGCAGAGGA TTACAGAACA ACCAGGAGAA
AATGTTGAGG CATCTGTAAT GCATTGCTGA ATTATAACAA TTTTAGTGTA ATGAATAACT TTTGTTTTTC TTTAAACATT
TAACCTCCGT AACTTTAGTA TTCTAAGAAA GTTTGATATG TTCGTGTTTA TGCCTTGTTT GTGGTTTACA GACTTGAGTT
TTTATCAATT TGATTTTATA ATTTTGATTT TGGTTAGATC TGAGTTTGAA GTAAC

>Vigan.01G008100.01
ATGAGGGTTC TGCAACTCGG TTTGTTTCTC GCTTTGGCAT GTGGATTTGC AGCCATTTCC ATCTACATCA CCGGACTCTC
GGATCCTTTT GTATATCCCG GTTATCGCCT CACAGATGAA GACACCGAAG CATTGCTTTC GCTGCACGAC ACTTTCCAGA
AGTGTGTGAG TGCAAATGGA CTTGGCCTAA AAGCAACTAG GGGCATTGAT TATTGCCAAA CCACAATAAA TTTCCCCAGT
GACACTATCC CCAAATGGAA AGATCCAAAA ACTGGAGAAC TTGAAGCTCT GTCTTTTGAT TTTAATCTAT GTGAAGCTGT
GGCATCATGG GAGCAGGTGC GGAACAGCAC CACTATCCTC ACCAAGGAAT TCATTGATTC TTTACCAAAT GGATGGGAGG
AATATGCATG GCGTAGGATC AATAAAGGAA TACAGCTCAA CCGCTGTGAG AATAAGACCT TGTGCATGGA GAAACTTTCA
CTAGTTCTCC CCGAAACACC ACCATACTTC CCTAGACAGT TTGGGCGCTG TGCTGTTATT GGTAATTCAG GAGACCTCTT
GAAAACAAAA TTTGGAAACG AGATAGATGG TTATGAAGTT GTCATTAGAG AAAATGGTGC TCCAATTGAG AATTACACTG
ATTATGTGGG TAGGAAAAGC ACATTTCGCC TTCTAAACCG AGGATCTGCT AAAGCGCTAG ATAAAGTTGT AGAGTTAGAT
GAACAAAGAA AAGAAGTGTT GATAGTAAAA ACAACAATTC ATGATATCAT GAACAAAATG ATTCGGGAGG TTCCTATAAA
AAATCCTGTG TACCTCATGC TAGGTGCATC CTTTGGCTCA GCAGCAAAAG GAACTGGACT TAAGGCTCTT GAATTTGCTC
TCTCTATGTG CGATTCAGTG GATATGTATG GTTTCACTGT AGATCCTGGT TATAAAGAAT GGACAAGGTA TTTCTCTGAA
TCCCGTCAAG GCCATACCCC ATTGCATGGA AGAGCTTACT ATCAGATGAT GGAATGCTTG GGGCTTATCA AAATTCATTC
TCCCATGCGA GCTGATCCTA ATCGTGTTGT AAAATGGGTT CCGAGCCACC ATATTATAAG AGCTGCTAGA ATTGCATCGG
AGAAATTATT GAGGAGAGTT GGAGGAGGAT CTGAAGATCC ACTTGCTGTA TGCTCCATAA TTAGGAAGCA AGTAAAAAGA
AATCTAAATG CAGTTTCGAA GCTCAGAAAG GCGGCACTTG ATCATTTAAG GTATGTGAAG AGAACAACAA TGTATCCCTT
AGAGCATAGT CCTGGACATG GGTCGCTTTG CACTGTACCA TCTGATTAA

>Vigan.01G008100.01
MRVLQLGLFL ALACGFAAIS IYITGLSDPF VYPGYRLTDE DTEALLSLHD TFQKCVSANG LGLKATRGID YCQTTINFPS
DTIPKWKDPK TGELEALSFD FNLCEAVASW EQVRNSTTIL TKEFIDSLPN GWEEYAWRRI NKGIQLNRCE NKTLCMEKLS
LVLPETPPYF PRQFGRCAVI GNSGDLLKTK FGNEIDGYEV VIRENGAPIE NYTDYVGRKS TFRLLNRGSA KALDKVVELD
EQRKEVLIVK TTIHDIMNKM IREVPIKNPV YLMLGASFGS AAKGTGLKAL EFALSMCDSV DMYGFTVDPG YKEWTRYFSE
SRQGHTPLHG RAYYQMMECL GLIKIHSPMR ADPNRVVKWV PSHHIIRAAR IASEKLLRRV GGGSEDPLAV CSIIRKQVKR
NLNAVSKLRK AALDHLRYVK RTTMYPLEHS PGHGSLCTVP SD*