GBrowse Details

Vigan.01G008300.01

Basic Information:
Name: Vigan.01G008300.01
Multiple alignment
Variant Information
Position: Chr01:508963..511956 (+ strand)
Length: 2994
Functional Information:
Description: Similar to uncharacterized LOC101217184. [XP_004160428.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.18,10.83,13.46,110.18,4.20,5.29,3.13,26.65
Arabidopsis thaliana homolog: AT1G18060.1
Automatic updates:
Name: NM_001248475 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305950 (LOC100305950), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:508963..509033 (+ strand)
Length: 71
Type: five_prime_UTR
Position: Chr01:509034..509285 (+ strand)
Length: 252
Type: CDS
Position: Chr01:509597..509779 (+ strand)
Length: 183
Type: CDS
Position: Chr01:509889..509948 (+ strand)
Length: 60
Type: CDS
Position: Chr01:511379..511666 (+ strand)
Length: 288
Type: CDS
Position: Chr01:511667..511956 (+ strand)
Length: 290
Type: three_prime_UTR


>Vigan.01G008300.01
ATATAATAAA CAAAAATGGT TGAGAAGTGA AGTGAGATAT ATTATTATTA TAGCATCACT TGTAATCATA AATGGCATCG
AACTCAATTC ACATGTTGTT CGTTTCTTCC TTCAGTTTGT GTTTCCCAAA TTCATCTCGC TTTCAACTTT CAAAGCTCTC
ACCACAATTT AAACCTCTGA ATTCCATTCC TCTCAGTGGA AGGAAACACT GCAACATTGT TCGATTTCCC AGAGAAAGAA
CAAGGACCAG AGCAACCATT GATGATGTTG AAACAGACCA ACTTTCCTCA ACACCCATTG TTGAGAATGA GAAAGCCAAA
AAGGATGTAG AGGAAAGTGT GAAAGTGTTA AAAGATGCAG CTAAGACAAG AAAGGTTGCA GCAGAGGAGG TTCTTTCTGC
ACTGTCTATC CTTGAGAAAG CAAAAGTTGA TCCTTCTGGT TTTTTTGAAA CCCTCGGTGG CAATAAATCT CCTGGGAGGA
CCTGGATGCT GATTTTTACT GCTGAGAAAA AATTAAAAGG TGGTCGGTAT TTTCCTCTCA CAGCAGTTCA GAGGTTTGAT
GCCACTGCAA AGAGGATCGA AAATGGAGTA TATCTTGGAC CCATCGGACA GTTAACATTT GAAGGCAGAC TTTCATGGAA
AAAGAGAATA CTGGCTTTTG TTTTTGAGAA CATACGAGTA AAACTTGGAC CCTTTCAACC TCTACAGATC AGTCTAGGAA
AAAAGGAAGA TAGGGAACCG GACAATAAGG ATCCTTTCTT CATCTGGTTT TATGTTGATG AGGAAATTGC GGTTGCTCGA
GGCCGGAGTG GAGGAACTGC ATTCTGGTGC CGGTGTCGGC GGGTCAATAA CTGATTCTTT CTAACTTTTT TTGTTTTGAA
CTTTCTTTTC AACTTCTGAA TTTGGATGGA GTGATTTATG TATATATGTA AGCATTTAAC TTCAGTTGGA GGTAAACATA
ATTGTTCTTG TATATTATTG TATAATTATA TTGAAGTTCG TGTGTTTCAT GATATTACTG ATGTTGGGGC ATTTGTGAAG
AAATCATTGT TCACCAACTA AAGGAAGAAA AAGGGAATTT GAGAAGTAGG AGAATAGGAG GAAAAGAAGA TTCACCACCA
GGTCTGCTTA CATAATTGAA CAGG

>Vigan.01G008300.01
ATGGCATCGA ACTCAATTCA CATGTTGTTC GTTTCTTCCT TCAGTTTGTG TTTCCCAAAT TCATCTCGCT TTCAACTTTC
AAAGCTCTCA CCACAATTTA AACCTCTGAA TTCCATTCCT CTCAGTGGAA GGAAACACTG CAACATTGTT CGATTTCCCA
GAGAAAGAAC AAGGACCAGA GCAACCATTG ATGATGTTGA AACAGACCAA CTTTCCTCAA CACCCATTGT TGAGAATGAG
AAAGCCAAAA AGGATGTAGA GGAAAGTGTG AAAGTGTTAA AAGATGCAGC TAAGACAAGA AAGGTTGCAG CAGAGGAGGT
TCTTTCTGCA CTGTCTATCC TTGAGAAAGC AAAAGTTGAT CCTTCTGGTT TTTTTGAAAC CCTCGGTGGC AATAAATCTC
CTGGGAGGAC CTGGATGCTG ATTTTTACTG CTGAGAAAAA ATTAAAAGGT GGTCGGTATT TTCCTCTCAC AGCAGTTCAG
AGGTTTGATG CCACTGCAAA GAGGATCGAA AATGGAGTAT ATCTTGGACC CATCGGACAG TTAACATTTG AAGGCAGACT
TTCATGGAAA AAGAGAATAC TGGCTTTTGT TTTTGAGAAC ATACGAGTAA AACTTGGACC CTTTCAACCT CTACAGATCA
GTCTAGGAAA AAAGGAAGAT AGGGAACCGG ACAATAAGGA TCCTTTCTTC ATCTGGTTTT ATGTTGATGA GGAAATTGCG
GTTGCTCGAG GCCGGAGTGG AGGAACTGCA TTCTGGTGCC GGTGTCGGCG GGTCAATAAC TGA

>Vigan.01G008300.01
MASNSIHMLF VSSFSLCFPN SSRFQLSKLS PQFKPLNSIP LSGRKHCNIV RFPRERTRTR ATIDDVETDQ LSSTPIVENE
KAKKDVEESV KVLKDAAKTR KVAAEEVLSA LSILEKAKVD PSGFFETLGG NKSPGRTWML IFTAEKKLKG GRYFPLTAVQ
RFDATAKRIE NGVYLGPIGQ LTFEGRLSWK KRILAFVFEN IRVKLGPFQP LQISLGKKED REPDNKDPFF IWFYVDEEIA
VARGRSGGTA FWCRCRRVNN *