GBrowse Details

Vigan.01G011400.01

Basic Information:
Name: Vigan.01G011400.01
Multiple alignment
Variant Information
Position: Chr01:710274..715512 (+ strand)
Length: 5239
Functional Information:
Description: Similar to Uncharacterized protein. [I1KQE2, Glycine max]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: mitochondrial outer membrane (GO:0005741)
InterPro: Porin domain (IPR023614)
Eukaryotic porin/Tom40 (IPR027246)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:34.30,42.00,29.08,18.74,52.90,62.44,50.74,21.16
Arabidopsis thaliana homolog: AT3G20000.1
Automatic updates:
Name: NM_001255676 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial import receptor subunit TOM40 homolog 1-like (RSDV1-LIKE), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:710274..710531 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr01:710532..710640 (+ strand)
Length: 109
Type: CDS
Position: Chr01:710726..710807 (+ strand)
Length: 82
Type: CDS
Position: Chr01:710893..710995 (+ strand)
Length: 103
Type: CDS
Position: Chr01:711078..711173 (+ strand)
Length: 96
Type: CDS
Position: Chr01:711521..711571 (+ strand)
Length: 51
Type: CDS
Position: Chr01:711758..711823 (+ strand)
Length: 66
Type: CDS
Position: Chr01:713298..713399 (+ strand)
Length: 102
Type: CDS
Position: Chr01:713685..713753 (+ strand)
Length: 69
Type: CDS
Position: Chr01:713830..713913 (+ strand)
Length: 84
Type: CDS
Position: Chr01:715084..715179 (+ strand)
Length: 96
Type: CDS
Position: Chr01:715288..715344 (+ strand)
Length: 57
Type: CDS
Position: Chr01:715345..715512 (+ strand)
Length: 168
Type: three_prime_UTR


>Vigan.01G011400.01
GTGTGTAATG GCGTGATTGG GAGGAAGTAA ACTGCTAGGT ATAATGATTG AAAACGGGTC GGGTCGGTTC GGGTGGGTTA
AAGTTTGAGA TGGAAACACA ATGTGGTGTA GTGAGTATAA GCTTGTCCTA CTCGGAAAGT GAATTAGGGT TTTAGCAGTG
GTGGAAGGTT GTTGAGGACT GAGGAGGGTT TTAGAATCAG ATTTGTTCGT TCCTTCTCTC TCTCTCTCAC TCTCTTTCAC
TCTCTCTCTG TGATTCCAAT GGAGACTCCT GTTCCTCCTC CTCCTGCCGC CGCCGCCGAT AAAGTGGTGG ATTACTTCAA
TCTTCCATGT CCAATTCCCT TCGAGGAGCT TCATCGCGAA GCTATGATGT CGTTGAAGCC AGATCTTTTT GAGGGCATGC
GTTTTGATTT CACCAAGATG CTCAATCAGA AGTTCACTCT CAATCACAGC GTCTTGATGG GACCAACTGA GATTCCCTCT
CAGTCGACGG AGACAATTAA GATTCCAACT GCTCACTATG AGTTTGGCTC AACCTTCATT GATCATCCTA GGTTGTTGCT
TTGGGGGAGG ATTTTGACTG ACGGGAGGCT CAATGCTAGA GTCAAGTGTG ATTTGTCTGA AAATCTCACG TTTAAAGCCA
ATGCTCAGCT TACGAATGAA CCACATATGT CTCATGGGAT GTTCAACTTT GATTACAAGG GAAAAGACTA TAGGACACAG
TTTCAACTCG GGAATGGAGC CTTACTTGGA GCAAGTTATA TTCAGAGTGT GACACAGCAC TTATCATTGG GTGGGGAGGT
ATTTTGGGCT GGTCAGCATA GGAAGTCTGG TGTTGGTTAT GCTGCTCGCT ACAACACTGA TAAAATGGTT GCTACAGGGC
AAGTTGCTAG CACTGGAATG GTTCTTCTAA GCTATGTTCA GAAGGTATCT GAGAAGGTTT CTCTAGCATC TGAATTTATG
TGCAACTACT TGTCAAGAGA TGTCACGGCT AGCTTTGGTT ATGACTACAT CCTTAGACAG TGCCGCCTTA GGGGAAAGAT
AGATTCCAAT GGCTGTGTTG CTGCTTTTTT GGAGGAGCGA TTAAATATGG GTCTGAATTT TATTCTTTCT GCAGAGCTTG
ACCACAGGAA AAAAGACTAC AAATTTGGGT TTGGTTTGAC CGTTGGAGAA TAAGTAAGCA GGACTAGAAT TGTGTTTCAT
TGCTTTAGGC AGCTTAGCAA GCTTCCTTGC ATCTTTTTCC TTGTTGGAGA TTTTTCTTTC CAAAAAAGAA AAGAGGAAAT
ATCGTTTGTG TCGGGAAACA CTATTTTCAA TCCACAAGTA GCTGCAGAAT TTTCAGTAGT C

>Vigan.01G011400.01
ATGGAGACTC CTGTTCCTCC TCCTCCTGCC GCCGCCGCCG ATAAAGTGGT GGATTACTTC AATCTTCCAT GTCCAATTCC
CTTCGAGGAG CTTCATCGCG AAGCTATGAT GTCGTTGAAG CCAGATCTTT TTGAGGGCAT GCGTTTTGAT TTCACCAAGA
TGCTCAATCA GAAGTTCACT CTCAATCACA GCGTCTTGAT GGGACCAACT GAGATTCCCT CTCAGTCGAC GGAGACAATT
AAGATTCCAA CTGCTCACTA TGAGTTTGGC TCAACCTTCA TTGATCATCC TAGGTTGTTG CTTTGGGGGA GGATTTTGAC
TGACGGGAGG CTCAATGCTA GAGTCAAGTG TGATTTGTCT GAAAATCTCA CGTTTAAAGC CAATGCTCAG CTTACGAATG
AACCACATAT GTCTCATGGG ATGTTCAACT TTGATTACAA GGGAAAAGAC TATAGGACAC AGTTTCAACT CGGGAATGGA
GCCTTACTTG GAGCAAGTTA TATTCAGAGT GTGACACAGC ACTTATCATT GGGTGGGGAG GTATTTTGGG CTGGTCAGCA
TAGGAAGTCT GGTGTTGGTT ATGCTGCTCG CTACAACACT GATAAAATGG TTGCTACAGG GCAAGTTGCT AGCACTGGAA
TGGTTCTTCT AAGCTATGTT CAGAAGGTAT CTGAGAAGGT TTCTCTAGCA TCTGAATTTA TGTGCAACTA CTTGTCAAGA
GATGTCACGG CTAGCTTTGG TTATGACTAC ATCCTTAGAC AGTGCCGCCT TAGGGGAAAG ATAGATTCCA ATGGCTGTGT
TGCTGCTTTT TTGGAGGAGC GATTAAATAT GGGTCTGAAT TTTATTCTTT CTGCAGAGCT TGACCACAGG AAAAAAGACT
ACAAATTTGG GTTTGGTTTG ACCGTTGGAG AATAA

>Vigan.01G011400.01
METPVPPPPA AAADKVVDYF NLPCPIPFEE LHREAMMSLK PDLFEGMRFD FTKMLNQKFT LNHSVLMGPT EIPSQSTETI
KIPTAHYEFG STFIDHPRLL LWGRILTDGR LNARVKCDLS ENLTFKANAQ LTNEPHMSHG MFNFDYKGKD YRTQFQLGNG
ALLGASYIQS VTQHLSLGGE VFWAGQHRKS GVGYAARYNT DKMVATGQVA STGMVLLSYV QKVSEKVSLA SEFMCNYLSR
DVTASFGYDY ILRQCRLRGK IDSNGCVAAF LEERLNMGLN FILSAELDHR KKDYKFGFGL TVGE*