VIGGS:GBrowse

Vigan.01G013800.01

Basic Information:

Name:	Vigan.01G013800.01 Multiple alignment Variant Information
Position:	Chr01:834909..838105 (- strand)
Length:	3197

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KQD5, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:14.08,13.26,4.23,10.51,9.54,7.68,4.99,6.10
Arabidopsis thaliana homolog:	AT1G67970.1

Automatic updates:

Name:	NM_001353429 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 14 (HSF-14), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:834909..835806 (- strand)
Length:	898
Type:	three_prime_UTR

Position:	Chr01:835807..836676 (- strand)
Length:	870
Type:	CDS

Position:	Chr01:837733..837957 (- strand)
Length:	225
Type:	CDS

Position:	Chr01:837958..838105 (- strand)
Length:	148
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G013800.01
AAAAAAGAAA AAGGTTGGAA AGTGCTGTGA CGGTACATAA GGAGCCGCAT GGAAATTTCA TTTCATTTCG TTTGGAGTTT
ACAACTTTGA ACTCATCTCT TCAGTTCCCT TTTCTCGCTC TTCTCTTCTC TTGTTTGTTG TATTAGCGAT GGTGAAATCG
AACGAAAATG GTTCTGGTTC AGGTGCGGTG CCTCCGTTCT TGAAAAAGTG TTACGATATG GTGGAAGACC GGAACACGGA
CTCCGTTATC CGTTGGAGCG ACGGCGGCGA CAGTTTCGTC ATATCTGACA CCACGCAATT CTCCGTCACG CTACTTCCTA
CCTATTTCAA ACACAACAAC TTCTCCAGTT TTATTAGACA ACTCAATATT TATGGTTTTA GGAAAATTGA TACGGATTGC
TGGGAATTTG CCAATGAAAA TTTTGTTAGG GGTCAAAAGC AATTGTTGAA AAATATACGC AGAAGAAAAC ATCCGCACGT
TGCAGACCAA CAAAAAGCAT TGCCGCAGAA TGACAATAGT GATGAACCAT CCCAAGAGGT ACCCCATCAT GGCCTCTGGA
AAGAAGTTGA GAATCTCAAA TCTGATAAAA ATTCGCTGAC CCAGGAGTTG GTCAAACTCA GGCAACACCA GGAATCTGCT
GAGAACAAGT TGCTGCTCCT GAGCGATCGC CTTCAAGGAA TGGAAAAGCA TCAGCAACAG ATGTTATCAT TCTTAGTCAT
GGTCGTGCAA AGCCCTGGGT TCCTGGTTCA ATTGCTTCAT CCAAAGGAAA ATAATTGGCG TTTGTCTGAA TCATGGAATG
TATTAGATGA AGATAAACAA GATGACAAGC CAATTGCTTC TGATGGGATG ATAATAAAGT ATAAGCCACC TGTAGGTGAA
AAACTCAAGC CTGTAGTTCC CCTACCTCCT GCTTTCGAAA AACAATCAGA ACCTGAGCTG GCTGCCGATG GGTTCAAAGA
CTTGTGCATT AGTTCCGAGT TCATGAAAGT GCTTATGGAT GAAAAATTGA GTCCACTAGA AAACCATTCT CCCTTTCTCC
TACCAGATTT ACCTGATGAC GGTTCATGGG AACAGCTTTT CCTAGGCAGT CCTTTCCTGG GAAACATTGA AGATTCTAAT
AAAGAAAGTG AGGAGCGCAC GGATAGTGGA ATGGAAATGG AACCGATAAT ATCAGAGACT CCAAATGAAA ATTCTCGAAC
TTTTGAATCG ATGATTGTAG AGATGGAGAA AACTCGAGAA TGAGTTGGAA TTTGGAGGGG CCAGAGTTTG GAATCTCATA
CTGAGCTAAT GGAGCTTTTG TTTCTGAAAC TAACAATATA TAGGGAAGGA AGTATTAATG TCCATTATTT TTCAGCTGGG
CTGTCTTCAC AAATTGCTTG GCGCTATAAT TATATTATAG TATTAAGTCG CAATTATTAT CTCTCCTATC TTTCATGGTA
GAGATCCTCA TCTCGAATCC GTGTAAGCCT GCTCTCATTT ATCTGTTGAG ATGCTAGATA TGCATGTTAT TTTTGTGTGT
GTGTGTGTGT GTTTTTGGAT AGATGATTAA ACATACTTTA AGAGTTTGAA GGTTCTGTCG ATATTGTGCT GTCAGTAAGG
TTCAGTTTGT ATCTGAAAAC TAATCCTGAT TTTCCTCGTG GACAGGTTTT ACCATCTTGA TAGATGTGAG AATGGGAGAT
GTCTGGTAGT GTGGCTGCCT ATTTATGATG GATCGAATGT TTCTTACTTG GAGAATTATA AGGGAGAACG GCACCTTTAT
TTTTTGCATG TTATTGGACA TGCCTTCATA TATAAAATTT CATATGATGC ATGCATACTA CTTTTGCATA TTATTGCAGA
AGCCAGTGCT TCTGACATGC TGTTTGCTAC CTACCTGTAT AGTTCTCATG CCTCTGAACC ATGTTTGTGT TTGATATGGC
GGCCAAGAGA TTCTGTTGCC CCCACAAAAA GTGACATCAT AGTATGACAT CTTTTTTTTT TCTTTGTTAA ATTAAGGATC
AGGGCTAACT TCAAAACATT TTGGGATGTT TAACGGGTAC ATGTAAATTC ATTAGGAGTC TGGGAACACT GATTAGTGAC
ATGAGAAATT CTCGAGAAGA TCATTACTCC ATAAGCTATT GCCTCTTATC CAAAATTATT G

[show][hide][copy]CDS

>Vigan.01G013800.01
ATGGTGAAAT CGAACGAAAA TGGTTCTGGT TCAGGTGCGG TGCCTCCGTT CTTGAAAAAG TGTTACGATA TGGTGGAAGA
CCGGAACACG GACTCCGTTA TCCGTTGGAG CGACGGCGGC GACAGTTTCG TCATATCTGA CACCACGCAA TTCTCCGTCA
CGCTACTTCC TACCTATTTC AAACACAACA ACTTCTCCAG TTTTATTAGA CAACTCAATA TTTATGGTTT TAGGAAAATT
GATACGGATT GCTGGGAATT TGCCAATGAA AATTTTGTTA GGGGTCAAAA GCAATTGTTG AAAAATATAC GCAGAAGAAA
ACATCCGCAC GTTGCAGACC AACAAAAAGC ATTGCCGCAG AATGACAATA GTGATGAACC ATCCCAAGAG GTACCCCATC
ATGGCCTCTG GAAAGAAGTT GAGAATCTCA AATCTGATAA AAATTCGCTG ACCCAGGAGT TGGTCAAACT CAGGCAACAC
CAGGAATCTG CTGAGAACAA GTTGCTGCTC CTGAGCGATC GCCTTCAAGG AATGGAAAAG CATCAGCAAC AGATGTTATC
ATTCTTAGTC ATGGTCGTGC AAAGCCCTGG GTTCCTGGTT CAATTGCTTC ATCCAAAGGA AAATAATTGG CGTTTGTCTG
AATCATGGAA TGTATTAGAT GAAGATAAAC AAGATGACAA GCCAATTGCT TCTGATGGGA TGATAATAAA GTATAAGCCA
CCTGTAGGTG AAAAACTCAA GCCTGTAGTT CCCCTACCTC CTGCTTTCGA AAAACAATCA GAACCTGAGC TGGCTGCCGA
TGGGTTCAAA GACTTGTGCA TTAGTTCCGA GTTCATGAAA GTGCTTATGG ATGAAAAATT GAGTCCACTA GAAAACCATT
CTCCCTTTCT CCTACCAGAT TTACCTGATG ACGGTTCATG GGAACAGCTT TTCCTAGGCA GTCCTTTCCT GGGAAACATT
GAAGATTCTA ATAAAGAAAG TGAGGAGCGC ACGGATAGTG GAATGGAAAT GGAACCGATA ATATCAGAGA CTCCAAATGA
AAATTCTCGA ACTTTTGAAT CGATGATTGT AGAGATGGAG AAAACTCGAG AATGA

[show][hide][copy]PROTEIN

>Vigan.01G013800.01
MVKSNENGSG SGAVPPFLKK CYDMVEDRNT DSVIRWSDGG DSFVISDTTQ FSVTLLPTYF KHNNFSSFIR QLNIYGFRKI
DTDCWEFANE NFVRGQKQLL KNIRRRKHPH VADQQKALPQ NDNSDEPSQE VPHHGLWKEV ENLKSDKNSL TQELVKLRQH
QESAENKLLL LSDRLQGMEK HQQQMLSFLV MVVQSPGFLV QLLHPKENNW RLSESWNVLD EDKQDDKPIA SDGMIIKYKP
PVGEKLKPVV PLPPAFEKQS EPELAADGFK DLCISSEFMK VLMDEKLSPL ENHSPFLLPD LPDDGSWEQL FLGSPFLGNI
EDSNKESEER TDSGMEMEPI ISETPNENSR TFESMIVEME KTRE*