VIGGS:GBrowse

Vigan.01G015200.01

Basic Information:

Name:	Vigan.01G015200.01 Multiple alignment Variant Information
Position:	Chr01:921789..924158 (- strand)
Length:	2370

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K5K3, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: ribosome (GO:0005840)
	Cellular Component: small ribosomal subunit (GO:0015935)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S5 (IPR000851)
	Ribosomal protein S5, C-terminal (IPR005324)
	Ribosomal protein S5, eukaryotic/archaeal (IPR005711)
	Ribosomal protein S5, N-terminal (IPR013810)
	Double-stranded RNA-binding domain (IPR014720)
	Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
	Ribosomal protein S5, N-terminal, conserved site (IPR018192)
	Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:35.77,102.39,42.65,25.42,70.66,116.61,57.88,40.08
Arabidopsis thaliana homolog:	AT3G57490.1

Automatic updates:

Name:	NM_001367946 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S2-like (LOC100784649), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:921789..922071 (- strand)
Length:	283
Type:	three_prime_UTR

Position:	Chr01:922072..922230 (- strand)
Length:	159
Type:	CDS

Position:	Chr01:923108..923764 (- strand)
Length:	657
Type:	CDS

Position:	Chr01:923765..924158 (- strand)
Length:	394
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G015200.01
GTGTTAGTGT AACTAAACTT GGTAGTACGT CTATAAACAA TCTTGTAATT CTCCTTTTAT TTATTTTTTT CTTTCCCTTT
TCGGTTATTG TGAATTTGTG ATCTTATCAA GGACTTTTTA AGGCATTTTT CCTCTATTCA AGCTTGTATA ATCTTCTTCA
ATTGCTTTTT CTTCGTCTGT GTCCAATATT TGAAATAATA AGCCCAGAAA TAGTTGGGCC AGCCCATCAC ATCAAGTAAA
ACGAAAACCC TACGCTGACC CTTTCATTAT ATACTTAGAT ATATAGAACA ACACTCGAAC CAGAAACCCT ACAGAGAGAA
CCTTCTCCCA TTTTTCACAA GCGCAGTTAC ACCCTCACTC CTTCCCCTTC CCTCTCTCGT ACACCGCAAA CAACATGGCC
GAACGTGGAA GTGGAGACCG TGGTGGATTC GGTCGTGGCT TCGGCGGTCG CGGTCGCGGC GACAGGGGCC GTGGCGGACG
CCGTAGGGCC GGGCGCCGCG ATGAGGAGGA AAAATGGGTT CCTGTAACGA AACTTGGACG CCTCGTAAAG GATGGTAAAA
TCCGGAGCCT GGAACAGATC TACCTGCACT CACTCCCAAT TAAGGAGCAC CAAATAATCG ACACCCTCGT CGGTCCTACT
CTCAAAGACG AGGTCATGAA GATCATGCCT GTCCAGAAAC AGACTCGCGC CGGTCAGCGC ACGCGCTTCA AGGCCTTCGT
CGTCGTTGGT GACGGTAACG GCCACGTGGG TCTCGGTGTC AAGTGCAGCA AGGAAGTCGC CACCGCCATT CGTGGCGCCA
TTATCTTGGC TAAGCTATCT GTTATTCCCG TCAGGAGAGG GTATTGGGGA AACAAGATTG GAAAGCCCCA CACCGTTCCC
TGTAAGGTTA CCGGAAAGTG TGGTTCCGTC ACAGTTCGCA TGGTCCCTGC CCCTCGTGGG TCCGGTATCG TCGCTGCCAG
GGTCCCCAAA AAGGTATTGC AGTTCGCCGG TATCGATGAT GTTTTCACCT CCTCCAGAGG TTCAACCAAA ACCCTCGGAA
ACTTCGTCAA GGCCACTTTT GATTGCCTGC TTAAAACCTA CGGTTTTCTA ACACCCGAAT TCTGGAAGGA AACTCGCTTC
TCTAAATCAC CATTCCAAGA ATACACAGAT CTATTGGCAA AGCCAACAGG AAAGGCCCTT ATCCTGGAAG AGGAAAGAGT
TGAAGCTTGA TGCTTGAGCT AGCAATTTTG AAGTTATCTG TTGATGAGTG TTTTAAGTAT TTTGCTAGGA CCTAGTAATT
ATGTTTTGCA GGTTTTTGTT ATTTCCTTTA TTATTGAGGT TATTGGTTTT GACCCTGTTT CAAATACCAA AATCTTCATG
GATTTATAAA ACTTTCACGC TGTCCTAACT TAATGGCAGA TTTCATAATT GAAAGAAAAG TGTGATCTGG GTTTAAGTTC
CCATGAGATT TGATTAAACG CATCTCTGAA ATTAATACGA TTTATTTGTT GTA

[show][hide][copy]CDS

>Vigan.01G015200.01
ATGGCCGAAC GTGGAAGTGG AGACCGTGGT GGATTCGGTC GTGGCTTCGG CGGTCGCGGT CGCGGCGACA GGGGCCGTGG
CGGACGCCGT AGGGCCGGGC GCCGCGATGA GGAGGAAAAA TGGGTTCCTG TAACGAAACT TGGACGCCTC GTAAAGGATG
GTAAAATCCG GAGCCTGGAA CAGATCTACC TGCACTCACT CCCAATTAAG GAGCACCAAA TAATCGACAC CCTCGTCGGT
CCTACTCTCA AAGACGAGGT CATGAAGATC ATGCCTGTCC AGAAACAGAC TCGCGCCGGT CAGCGCACGC GCTTCAAGGC
CTTCGTCGTC GTTGGTGACG GTAACGGCCA CGTGGGTCTC GGTGTCAAGT GCAGCAAGGA AGTCGCCACC GCCATTCGTG
GCGCCATTAT CTTGGCTAAG CTATCTGTTA TTCCCGTCAG GAGAGGGTAT TGGGGAAACA AGATTGGAAA GCCCCACACC
GTTCCCTGTA AGGTTACCGG AAAGTGTGGT TCCGTCACAG TTCGCATGGT CCCTGCCCCT CGTGGGTCCG GTATCGTCGC
TGCCAGGGTC CCCAAAAAGG TATTGCAGTT CGCCGGTATC GATGATGTTT TCACCTCCTC CAGAGGTTCA ACCAAAACCC
TCGGAAACTT CGTCAAGGCC ACTTTTGATT GCCTGCTTAA AACCTACGGT TTTCTAACAC CCGAATTCTG GAAGGAAACT
CGCTTCTCTA AATCACCATT CCAAGAATAC ACAGATCTAT TGGCAAAGCC AACAGGAAAG GCCCTTATCC TGGAAGAGGA
AAGAGTTGAA GCTTGA

[show][hide][copy]PROTEIN

>Vigan.01G015200.01
MAERGSGDRG GFGRGFGGRG RGDRGRGGRR RAGRRDEEEK WVPVTKLGRL VKDGKIRSLE QIYLHSLPIK EHQIIDTLVG
PTLKDEVMKI MPVQKQTRAG QRTRFKAFVV VGDGNGHVGL GVKCSKEVAT AIRGAIILAK LSVIPVRRGY WGNKIGKPHT
VPCKVTGKCG SVTVRMVPAP RGSGIVAARV PKKVLQFAGI DDVFTSSRGS TKTLGNFVKA TFDCLLKTYG FLTPEFWKET
RFSKSPFQEY TDLLAKPTGK ALILEEERVE A*