GBrowse Details

Vigan.01G023300.01

Basic Information:
Name: Vigan.01G023300.01
Multiple alignment
Variant Information
Position: Chr01:1534876..1538593 (+ strand)
Length: 3718
Functional Information:
Description: Similar to Uncharacterized protein. [I1K5T0, Glycine max]
GO: Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045)
InterPro: Peptidyl-tRNA hydrolase (IPR001328)
Peptidyl-tRNA hydrolase, conserved site (IPR018171)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.77,3.57,6.51,12.27,7.84,1.62,5.17,6.53
Arabidopsis thaliana homolog: AT1G18440.1
Automatic updates:
Name: BT091668 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-8D19 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:1534876..1535049 (+ strand)
Length: 174
Type: five_prime_UTR
Position: Chr01:1535050..1535295 (+ strand)
Length: 246
Type: CDS
Position: Chr01:1535421..1535505 (+ strand)
Length: 85
Type: CDS
Position: Chr01:1536265..1536332 (+ strand)
Length: 68
Type: CDS
Position: Chr01:1536651..1536701 (+ strand)
Length: 51
Type: CDS
Position: Chr01:1536778..1536851 (+ strand)
Length: 74
Type: CDS
Position: Chr01:1537659..1537717 (+ strand)
Length: 59
Type: CDS
Position: Chr01:1537800..1537876 (+ strand)
Length: 77
Type: CDS
Position: Chr01:1537964..1538077 (+ strand)
Length: 114
Type: CDS
Position: Chr01:1538078..1538593 (+ strand)
Length: 516
Type: three_prime_UTR


>Vigan.01G023300.01
TAAGTATTCC CTGTCACGCG GGTGACCCGG GTTCGATCCC CGGCAACGGC GTTGTTTTTG TTTATCATCA TGCGTTTTAT
TTCTGTTTTT CCTGTTACTT TCCAACCTAG CTTCCTCGAT TCTTCTTTTC TAGGGTTTAT CTTTTATGTT TGTGTTTGAT
TGACGTTTGA AAAAATGAAC ATTTGTAGTT TTTGGGTGTC GTCCATGAAA ATCCCCTTTC ACGGGTGTCG ATTCTCAAGG
CCCTTCTTCT CTCTATCTTC TTCGTCTCGC AATCGCATTA TGACCATTCA AAGTTCTTCT TCTTCTACTT CTTCTGCTTC
CATATCAACC GAGTCCAAAG AGAAGAAGAA GGAAAATTTA CCTTGGTTAA TCGTTGGCCT CGGCAATCCA GGCAAAAAGT
ACGCTGCCAC TCGCCACAAT GTGGGCTTTG AGATGGTTGA TGCCATAGCT GAAGCTGAAG GGATATCTAT GAACACTGTT
TCCTTCAAAG CTTTATTTGG GAAAGGTTTA ATAGGTGATG TCCCAGTCAT ACTTGCAAAA CCACAGACTT TTATGAATTC
TAGCGGTGAA TCTGTTGGGG CCATAGTTTC GTACTACAAG ATTCCACTAA AGCAAGTACT TGTGATCTTT GATGACTTGG
ATTTACCTTT TGCTAAATTG CGGCTTCTAC CAAAGGGTGG ACATGGAGGC CACAATGGAA TGAAGAGTGT TATTAATCAT
TTCAAAGGGA ATACTGGTTT TCCTCGTTTA AGAATTGGCA TCGGACGACC TCCCGGTAAA ATGGATCCTG TAGCATTTGT
TCTTCGCACG TTCACTAAAC AGGAAAGAGA AGAGTTGAGT TTTACATTAC AAGATGGAAT AGAAGCTCTT CGGATTCTTT
TGCTGGAAGG ATTTGATAAA AGTGCAACAT TTGTTAATAG TGCCAAAAAG ATAGAGCAAA CAGGTTGAGG AATAGCTTAT
TGAATATCCT TTTGACAAGT ACAAACAAGG ATCGTATAGC AAGGAGATAC ATACTAAAAA AGAGTAAATT CGTTCAAGCA
AATATTTATC CATTCTTTAA GAGGCAGTTT CTGCTCATTG AATTCGAACC TGAAGCTTGG AATCTTCGGG TACTATTCTG
TTGTGTTTTT TCAATTTTAA GCCCTGCCGG CACCCTGAAT TATATAGTGT ACAATGTTGT GAAATTATTA TTAGGCAGTT
GCAGGTAACT TATATAATAA TGATCACATA AGATCACTTT CTCTGTTTGT AAAGATCCCA TTTTTAGCTG CCAGGAAGTT
ATAGCTCAAA TTCACTCAAC ATCTGTCTTT TATTCTCTAT CACTATGTAC TAGAAGGTTT TTCCCATGAT TTTTATTGGT
TGACAAGACT ATTTATACAA CACTTGCTGA TGCATGATGT GGTCAATGAG TTGTGTTTCT TAATCAAAGT TATTGCGTAT
AATCTCTGCT TACATATGTA CGAC

>Vigan.01G023300.01
ATGAACATTT GTAGTTTTTG GGTGTCGTCC ATGAAAATCC CCTTTCACGG GTGTCGATTC TCAAGGCCCT TCTTCTCTCT
ATCTTCTTCG TCTCGCAATC GCATTATGAC CATTCAAAGT TCTTCTTCTT CTACTTCTTC TGCTTCCATA TCAACCGAGT
CCAAAGAGAA GAAGAAGGAA AATTTACCTT GGTTAATCGT TGGCCTCGGC AATCCAGGCA AAAAGTACGC TGCCACTCGC
CACAATGTGG GCTTTGAGAT GGTTGATGCC ATAGCTGAAG CTGAAGGGAT ATCTATGAAC ACTGTTTCCT TCAAAGCTTT
ATTTGGGAAA GGTTTAATAG GTGATGTCCC AGTCATACTT GCAAAACCAC AGACTTTTAT GAATTCTAGC GGTGAATCTG
TTGGGGCCAT AGTTTCGTAC TACAAGATTC CACTAAAGCA AGTACTTGTG ATCTTTGATG ACTTGGATTT ACCTTTTGCT
AAATTGCGGC TTCTACCAAA GGGTGGACAT GGAGGCCACA ATGGAATGAA GAGTGTTATT AATCATTTCA AAGGGAATAC
TGGTTTTCCT CGTTTAAGAA TTGGCATCGG ACGACCTCCC GGTAAAATGG ATCCTGTAGC ATTTGTTCTT CGCACGTTCA
CTAAACAGGA AAGAGAAGAG TTGAGTTTTA CATTACAAGA TGGAATAGAA GCTCTTCGGA TTCTTTTGCT GGAAGGATTT
GATAAAAGTG CAACATTTGT TAATAGTGCC AAAAAGATAG AGCAAACAGG TTGA

>Vigan.01G023300.01
MNICSFWVSS MKIPFHGCRF SRPFFSLSSS SRNRIMTIQS SSSSTSSASI STESKEKKKE NLPWLIVGLG NPGKKYAATR
HNVGFEMVDA IAEAEGISMN TVSFKALFGK GLIGDVPVIL AKPQTFMNSS GESVGAIVSY YKIPLKQVLV IFDDLDLPFA
KLRLLPKGGH GGHNGMKSVI NHFKGNTGFP RLRIGIGRPP GKMDPVAFVL RTFTKQEREE LSFTLQDGIE ALRILLLEGF
DKSATFVNSA KKIEQTG*