GBrowse Details

Vigan.01G026900.01

Basic Information:
Name: Vigan.01G026900.01
Multiple alignment
Variant Information
Position: Chr01:1856060..1857848 (+ strand)
Length: 1789
Functional Information:
Description: Similar to Cytoplasmic dynein light chain, putative. [B9RQL2, Ricinus communis]
GO: Biological Process: microtubule-based process (GO:0007017)
Cellular Component: microtubule associated complex (GO:0005875)
InterPro: Dynein light chain, type 1/2 (IPR001372)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.08,0.32,2.20,0.59,2.35,11.90,2.03,2.56
Automatic updates:
Name: NM_001248781 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dynein light chain 1-like (LOC100500277), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001351529 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dynein light chain type 1-like protein (LOC100499739), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:1856060..1856359 (+ strand)
Length: 300
Type: five_prime_UTR
Position: Chr01:1856360..1856497 (+ strand)
Length: 138
Type: CDS
Position: Chr01:1856634..1856777 (+ strand)
Length: 144
Type: CDS
Position: Chr01:1856778..1857848 (+ strand)
Length: 1071
Type: three_prime_UTR


>Vigan.01G026900.01
ATTTTTTTGT ATTTTTGTTG GAGAGAGAGA GAGAGAGGAG CAGATGGAGA CAAGAGATAG GTGAAAATAA AGGTGGTGTA
AGGATACGTG TATGTTTTGA AGTAGTGTCA GCCCATCAAT AATAAGATCA CTCAAATCAG CAATGCTGTT GGAACCAAAG
CTGGATTAAG TTGGAACTGG GCCTTCTTCA TTCTTCTGTT CTGCTGCCAC AATCTCAGCC ATAGGTCACA GATTGTTACA
CTACAAAAAC CCTGTTACAA AGAAGAACAA CCGAGAAGAA CCATCATCAC TCAATTAAGG ATGTTGGAAG GCAAAGCTTT
GGTGAAAGAA ACAGACATGT CACCCAAGAT GCAGATCCAT GCCATGGCCG CTGCTTCTCA TGCCCTTGAT CTCTACGATG
TTTCTGATTG CATTTCTGTT GCTGCCCATA TCAAGAAGGA ATTTGATAGT GTGTATGGGA ATGGATGGCA ATGCGTGGTG
GGATCGAATT TTGGGTGCTA TTTCACCCAT TCATCGGGGA CTTTCATCTA TTTTGCTCTG GAGACTCTTA ATTTTCTTAT
CTTTAAGGGG ACATCTTCTT GATTTATGCT ATGTACAATC TGAGATAGAA TCCTGGGTTT GGTTATGAGA GAAGGAATAG
GTTTTTGATT CTTCATCTGG TTATGGTTCC ATGCAGTAGC AGAATATTTG AGATGCGAGA GCATGGAACA AACTATGTAT
GGATGACTCA TGACATGTCT CCATCATCTG GCCTCTCAAA TCGACCATTT CGATCACTCT GGATTCTCCT ATGTAAATGC
ATGTATCGCT CCAACTATGA TTAAAATGCT GTCTCTGCTT TATGTAAAAC AAACAGAAAT AAAACTGTCT CAGCTTTATT
ATTTGTGGGA GAGTGCTTAT GTTTTGAACG AGTGTCCGTA TATTTAGCAA ATAAGAATAT AAAGAGAAAT GAAAAGTTTG
TGAAAGGAAA AAGGTACTAA AATTAGACAA TAATTTTTCC GAATTATTTG AGTAAATATT TAATTAAGCT AATAAATTGA
TCACAAGGTC CTCAATTAAT CCACTTATAA GCAGGCTCTC TATTTTATTG ACAACCAGTT GAGCCTCGTC TGCACAAAAG
CCTGTTCTCC AACCAGTTTC CCACATTCCA TTTATCTCTC GCTTGCACTT CATGTCTTTC TCCATCATTG CAAAGGTGTC
ATTGTATGCA AAATCTTCCT CTCTACAATC ATAATCTTCT CTGTAAAATT TCAGATTCTC AATGCCATCA CAGATTTCTT
CCACCAACTT GCATAAGGAG ATGCGTAATC TTGAGTTTCC CCCACATGCC AGCAAGAGAG AACGAACGAC TTCGGAGTCT
TGAAGACTCT TACGTTCTGT CAGTTCGTAA GCGCAATCCA AGTAAAGCCT CATGTTTGTA ATGCTGTAAA TGGTTTCATC
CTTTTCTAGG GTGTTGTGAC GATCCACATC AAGATTGAAG AGCTTCTTTG CATGTCCTAT GAATGATGGA CTCGTTAGAA
GAAAATGTTT CAGCTCTGTC CCTTCTCTGT CACCGTCGAT GCTATAAGCA TTGATATCAT CATTTCTATG TTCAGATTTG
AGCAGCGTAA TGACCTCATC GCCTGAAGAA CTCTTCCTCA TCTTGCATTT TTC

>Vigan.01G026900.01
ATGTTGGAAG GCAAAGCTTT GGTGAAAGAA ACAGACATGT CACCCAAGAT GCAGATCCAT GCCATGGCCG CTGCTTCTCA
TGCCCTTGAT CTCTACGATG TTTCTGATTG CATTTCTGTT GCTGCCCATA TCAAGAAGGA ATTTGATAGT GTGTATGGGA
ATGGATGGCA ATGCGTGGTG GGATCGAATT TTGGGTGCTA TTTCACCCAT TCATCGGGGA CTTTCATCTA TTTTGCTCTG
GAGACTCTTA ATTTTCTTAT CTTTAAGGGG ACATCTTCTT GA

>Vigan.01G026900.01
MLEGKALVKE TDMSPKMQIH AMAAASHALD LYDVSDCISV AAHIKKEFDS VYGNGWQCVV GSNFGCYFTH SSGTFIYFAL
ETLNFLIFKG TSS*