GBrowse Details

Vigan.01G029000.01

Basic Information:
Name: Vigan.01G029000.01
Multiple alignment
Variant Information
Position: Chr01:1999662..2004838 (+ strand)
Length: 5177
Functional Information:
Description: Similar to 7SK snRNA methylphosphate capping enzyme. [G7L862, Medicago truncatula]
GO: Biological Process: tRNA modification (GO:0006400)
Molecular Function: methyltransferase activity (GO:0008168)
Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176)
InterPro: tRNA (guanine-N-7) methyltransferase (IPR003358)
Bicoid-interacting 3 (IPR010675)
Bin3-type S-adenosyl-L-methionine binding domain (IPR024160)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.02,10.70,4.48,5.49,8.39,6.05,8.61,4.31
Arabidopsis thaliana homolog: AT5G51130.1
Structure :
Position: Chr01:1999662..1999800 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr01:1999801..1999881 (+ strand)
Length: 81
Type: CDS
Position: Chr01:1999969..2000083 (+ strand)
Length: 115
Type: CDS
Position: Chr01:2000229..2000276 (+ strand)
Length: 48
Type: CDS
Position: Chr01:2000931..2001204 (+ strand)
Length: 274
Type: CDS
Position: Chr01:2003233..2003320 (+ strand)
Length: 88
Type: CDS
Position: Chr01:2003695..2003760 (+ strand)
Length: 66
Type: CDS
Position: Chr01:2004138..2004206 (+ strand)
Length: 69
Type: CDS
Position: Chr01:2004325..2004414 (+ strand)
Length: 90
Type: CDS
Position: Chr01:2004415..2004838 (+ strand)
Length: 424
Type: three_prime_UTR


>Vigan.01G029000.01
GTAAATTAGG CAGAAGGAAA TATCAATTTT GAATGTTCAT TATAGAATGC CAACCCTCTA AACCCCAAAT CATAGAGGAG
GGTTTTATTG CAGGTGAGGG AAAAACATAG AGAAGAGAAG AAGAGAAGGA GGCGATTCAA TGGAAACCCA AAAGCAGAGC
AGTAAAAAGC GGAAACAAGT TTTCCCATTC GGAAACTACA GGAGTTACTA TGGATATCGA ATTGATCAAG GCACGGATGA
AGATCCTCGA TTGAAAGTGT TAAGAAAGGA ATGGTTTGAA GGGAAGGAGT GTCTTGATAT TGGCTGCAAC AACGGGATAA
TCACTATACA GATTGCACAG AAGTTTTGCT GCCGGAGCAT TCTTGGAATT GACATTGATT CTGATCGAGT TCAGGATGCA
TATTGGAATC TCAGAAAATC TGCTAGATTG AGCTCTTCTG GGAATAAACC TGTGAAAGCC TCCAAACTTC AGGACAAGGA
TCATGCTGAT GATTCAGGCA ACAGAGTCAC TGCATTGTCT AGAGTTGATA CGAAGGAGAT TTCAGAGAAA CATTCTTCTC
CAGAGCAAAT TGATCTGTTT ACTATAGTTT CATTTAAACG AGAAAATTTT GTTCAGAGTC GACATCCACC AGGAAAGAAC
TATGATACAA TCCTTTGTTT GAGTGTAACA AAGTGGATAC ATCTAAATTG GGGAGATGAC GGCTTAATTA CTTTATTTTC
AGAGATTTGG AAACTGCTCC GACCTGGTGG CATTTTTGTG GTGGAACCTC AACCATGGAA GTCATACGAA AGCAATCGTA
GTGTCTCAGA GACCACTGCT GCCAACTACC GTAATATTAC AATTCGTCCA GAACAATTTC AGGAAATATT ACTAGATAAG
ATTGGATTTC GAACAGTAGA AGACATCACT TCCGGTTTGA CACTTAGCAA GACTGGTTTC AATAGACCAA TTTTGGTTTT
CCGCAAATGA TCTCTGCAGG GTCAGGTGCA GAGTCAATGT CATTTAACAT GGAGTAGTTT TACTTTTGCT CCACATAGAT
GTGGCTGTTA TATGTTGCCA TCAATGCTGG CTCACAGATC GCAATCTTGC TTGCAGTGCA CCTACTGTTC ACGACGAAAA
CTTGATATGC ATGGAGCATC CTTTGTGAGA ATACCAGTAT TAAAACAAAT TGAGTTGAAG GGACTTGGAA TGTAGAGGAA
AATGCACGCT AAAATATTTA TATCTTTCGT GTAAATGCGA ATGGCTTAAA AAATTTACTC CACTTAATTT AAGTTTTAAG
CTAAGAAATG GGAAGTAATT TCTCTTTTAT TTTATAGATA GAATGGTTGG TTTCTATTAT TTTTCAATGT CCTCTTGGAG
TATTTATTCT AAATATGCAT AAGGTCTATT TCAG

>Vigan.01G029000.01
ATGGAAACCC AAAAGCAGAG CAGTAAAAAG CGGAAACAAG TTTTCCCATT CGGAAACTAC AGGAGTTACT ATGGATATCG
AATTGATCAA GGCACGGATG AAGATCCTCG ATTGAAAGTG TTAAGAAAGG AATGGTTTGA AGGGAAGGAG TGTCTTGATA
TTGGCTGCAA CAACGGGATA ATCACTATAC AGATTGCACA GAAGTTTTGC TGCCGGAGCA TTCTTGGAAT TGACATTGAT
TCTGATCGAG TTCAGGATGC ATATTGGAAT CTCAGAAAAT CTGCTAGATT GAGCTCTTCT GGGAATAAAC CTGTGAAAGC
CTCCAAACTT CAGGACAAGG ATCATGCTGA TGATTCAGGC AACAGAGTCA CTGCATTGTC TAGAGTTGAT ACGAAGGAGA
TTTCAGAGAA ACATTCTTCT CCAGAGCAAA TTGATCTGTT TACTATAGTT TCATTTAAAC GAGAAAATTT TGTTCAGAGT
CGACATCCAC CAGGAAAGAA CTATGATACA ATCCTTTGTT TGAGTGTAAC AAAGTGGATA CATCTAAATT GGGGAGATGA
CGGCTTAATT ACTTTATTTT CAGAGATTTG GAAACTGCTC CGACCTGGTG GCATTTTTGT GGTGGAACCT CAACCATGGA
AGTCATACGA AAGCAATCGT AGTGTCTCAG AGACCACTGC TGCCAACTAC CGTAATATTA CAATTCGTCC AGAACAATTT
CAGGAAATAT TACTAGATAA GATTGGATTT CGAACAGTAG AAGACATCAC TTCCGGTTTG ACACTTAGCA AGACTGGTTT
CAATAGACCA ATTTTGGTTT TCCGCAAATG A

>Vigan.01G029000.01
METQKQSSKK RKQVFPFGNY RSYYGYRIDQ GTDEDPRLKV LRKEWFEGKE CLDIGCNNGI ITIQIAQKFC CRSILGIDID
SDRVQDAYWN LRKSARLSSS GNKPVKASKL QDKDHADDSG NRVTALSRVD TKEISEKHSS PEQIDLFTIV SFKRENFVQS
RHPPGKNYDT ILCLSVTKWI HLNWGDDGLI TLFSEIWKLL RPGGIFVVEP QPWKSYESNR SVSETTAANY RNITIRPEQF
QEILLDKIGF RTVEDITSGL TLSKTGFNRP ILVFRK*