GBrowse Details

Vigan.01G030200.01

Basic Information:
Name: Vigan.01G030200.01
Multiple alignment
Variant Information
Position: Chr01:2080188..2082444 (- strand)
Length: 2257
Functional Information:
Description: Similar to protein phosphatase 1 regulatory subunit pprA-like isoform X1. [XP_004503472.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat, typical subtype (IPR003591)
Leucine rich repeat 4 (IPR025875)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:47.76,36.59,21.37,22.46,28.55,9.84,21.08,19.10
Arabidopsis thaliana homolog: AT5G19680.1
Automatic updates:
Name: NM_001255583 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein phosphatase 1 regulatory subunit 7-like (LOC100782492), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255892 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein phosphatase 1 regulatory subunit pprA-like (LOC100781548), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:2080188..2080559 (- strand)
Length: 372
Type: three_prime_UTR
Position: Chr01:2080560..2080764 (- strand)
Length: 205
Type: CDS
Position: Chr01:2080865..2081007 (- strand)
Length: 143
Type: CDS
Position: Chr01:2081542..2081688 (- strand)
Length: 147
Type: CDS
Position: Chr01:2081778..2082008 (- strand)
Length: 231
Type: CDS
Position: Chr01:2082096..2082374 (- strand)
Length: 279
Type: CDS
Position: Chr01:2082375..2082444 (- strand)
Length: 70
Type: five_prime_UTR


>Vigan.01G030200.01
GGGCAGGGCA AGGCAATGTG TTCTTTTGGT TGAAGCAGAA AGTGAAATTG GAATCTTCTT TAATTGGAAG ATGGAGGAGT
CGGTAGAATC AATAGCGGTT CCGGATCACG ACGAAGACGA TCCTTCATCA ACGATTTTGG ATCTCAGCAG TTACCAGCTC
CACGACCTTG ACTCGGTCGA GTTGCCTCCC ACTCTCACCG AGTTGGACCT CACCGCGAAT CGCTTGTCCA CGCTGGACCC
GCGCATAGCC AACCTCTCCC ATCTTAAGAA GCTCTCACTG CGCCAGAACC TCGTCACCGA CAACGCCGTT CTCCCTCTCT
CTTCCTGGAG CGCCCTCGCG TCGCTCGAGG AGCTTGTGCT GCGGGATAAT CAATTGAGGA ACATTCCTGA CGTCAGCATA
TTCCAGAAGC TTCTGGTATT CGATGTTTCG TTCAACGAGA TTAGTTCGCT ACACGGCTGT GCCAAGGTCT CCGATACGCT
CAAGGAACTC TACGTGTCCA TGAATCAAGT TTTGAAGATC GAGGAGATCG ACCACTTCCA TCAGCTGCAG ATTCTTGAAC
TCGGCTCCAA TAAATTGCGG GTAATGGAGA ATTTGCAGAG CCTTACGAAT TTGCAGCAGC TGTGGCTCGG TCGGAATCGA
ATTAAAGTTG TAAATCTGTG TGGTCTCAAT TGCATTAAGA AAATTAGTTT GCAAAGCAAT CGTCTCACTT CAATGACGGG
TTTTGAGGGC TGCATAGCTC TAGAAGAACT ATACTTGAGC CATAATGGTA TTTCAAAAAT GGAAGGGTTG TCGACATTAG
TCAATCTCCG GGTTTTAGAT GTATCGTCAA ATAAGTTAAC TTCAGTGGAT GACATTACGA ACCTGACGCA ATTGGAAGAT
TTGTGGCTTA ACGACAACCA AATAGCATCA CTTGAAGGAA TTGCTGAGGC TGTTGTTGGT TGTAGAGAGA AGCTTACAAC
CATCTACCTG GAGCATAACC CATGTGTACG GTTCCTTTTT AGTGTAACGT GTTTGATTCA TTTTCTTCTT GAAACCTGGA
GCATAACCCA TGTTGTTTTA TGCATTATAC TATGAGTGTT ACTTTTTAAT TAATCTTGTT AGGGAATTGT GTTGTAGACT
ATAAAATGGG AATAATCTTA TTGAGTTTCA TTTAGAAGCT CCCATTGCCA CTATTCTATT TGTGGCTTTG ACTGGATAAG
TAAATGAAGT CTCTGTAAAA AGCATAATTT ATAAGTTGTA CTGCTATATA TTTTCACCAT TGAGCCTTTC GACCCTGTTT
GTTTGTTATT TTCTAAGCAC TGGGTTTCTG GGAGGAAGCT TAATTTGACA TTTATATTTA TCCTTCAGTG ACAGATTCCA
TGTTATTCCT TGTCTGATGT TTCTTCTTTA GGACTTCTCT GTATATGATG TACTTATTTA GGAACTAATC CTGCTTGTTT
CTTTCAG

>Vigan.01G030200.01
ATGGAGGAGT CGGTAGAATC AATAGCGGTT CCGGATCACG ACGAAGACGA TCCTTCATCA ACGATTTTGG ATCTCAGCAG
TTACCAGCTC CACGACCTTG ACTCGGTCGA GTTGCCTCCC ACTCTCACCG AGTTGGACCT CACCGCGAAT CGCTTGTCCA
CGCTGGACCC GCGCATAGCC AACCTCTCCC ATCTTAAGAA GCTCTCACTG CGCCAGAACC TCGTCACCGA CAACGCCGTT
CTCCCTCTCT CTTCCTGGAG CGCCCTCGCG TCGCTCGAGG AGCTTGTGCT GCGGGATAAT CAATTGAGGA ACATTCCTGA
CGTCAGCATA TTCCAGAAGC TTCTGGTATT CGATGTTTCG TTCAACGAGA TTAGTTCGCT ACACGGCTGT GCCAAGGTCT
CCGATACGCT CAAGGAACTC TACGTGTCCA TGAATCAAGT TTTGAAGATC GAGGAGATCG ACCACTTCCA TCAGCTGCAG
ATTCTTGAAC TCGGCTCCAA TAAATTGCGG GTAATGGAGA ATTTGCAGAG CCTTACGAAT TTGCAGCAGC TGTGGCTCGG
TCGGAATCGA ATTAAAGTTG TAAATCTGTG TGGTCTCAAT TGCATTAAGA AAATTAGTTT GCAAAGCAAT CGTCTCACTT
CAATGACGGG TTTTGAGGGC TGCATAGCTC TAGAAGAACT ATACTTGAGC CATAATGGTA TTTCAAAAAT GGAAGGGTTG
TCGACATTAG TCAATCTCCG GGTTTTAGAT GTATCGTCAA ATAAGTTAAC TTCAGTGGAT GACATTACGA ACCTGACGCA
ATTGGAAGAT TTGTGGCTTA ACGACAACCA AATAGCATCA CTTGAAGGAA TTGCTGAGGC TGTTGTTGGT TGTAGAGAGA
AGCTTACAAC CATCTACCTG GAGCATAACC CATGTGTACG GTTCCTTTTT AGTGTAACGT GTTTGATTCA TTTTCTTCTT
GAAACCTGGA GCATAACCCA TGTTGTTTTA TGCATTATAC TATGA

>Vigan.01G030200.01
MEESVESIAV PDHDEDDPSS TILDLSSYQL HDLDSVELPP TLTELDLTAN RLSTLDPRIA NLSHLKKLSL RQNLVTDNAV
LPLSSWSALA SLEELVLRDN QLRNIPDVSI FQKLLVFDVS FNEISSLHGC AKVSDTLKEL YVSMNQVLKI EEIDHFHQLQ
ILELGSNKLR VMENLQSLTN LQQLWLGRNR IKVVNLCGLN CIKKISLQSN RLTSMTGFEG CIALEELYLS HNGISKMEGL
STLVNLRVLD VSSNKLTSVD DITNLTQLED LWLNDNQIAS LEGIAEAVVG CREKLTTIYL EHNPCVRFLF SVTCLIHFLL
ETWSITHVVL CIIL*