GBrowse Details

Vigan.01G032500.01

Basic Information:
Name: Vigan.01G032500.01
Multiple alignment
Variant Information
Position: Chr01:2262121..2264469 (- strand)
Length: 2349
Functional Information:
Description: Similar to Profilin-1. [P49231, Phaseolus vulgaris]
GO: Biological Process: actin cytoskeleton organization (GO:0030036)
Molecular Function: actin binding (GO:0003779)
InterPro: Profilin (IPR005455)
Profilin conserved site (IPR027310)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:507.66,96.37,184.01,169.00,188.78,441.21,207.30,211.37
Arabidopsis thaliana homolog: AT4G29350.1
Automatic updates:
Name: NM_001250590 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max profilin (LOC100127411), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001376205 NCBI(nuccore)
Organism: Arachis hypogaea
Description: Arachis hypogaea profilin (LOC112802061), mRNA.
PubMed ID: 23350842 NCBI(pubmed)
22967170 NCBI(pubmed)
10474031 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:2262121..2262545 (- strand)
Length: 425
Type: three_prime_UTR
Position: Chr01:2262546..2262680 (- strand)
Length: 135
Type: CDS
Position: Chr01:2263425..2263562 (- strand)
Length: 138
Type: CDS
Position: Chr01:2264000..2264122 (- strand)
Length: 123
Type: CDS
Position: Chr01:2264123..2264469 (- strand)
Length: 347
Type: five_prime_UTR


>Vigan.01G032500.01
GGAAAACCTC CATCAAGTAA CAATTTGGGT TGACATACAC ACGTAACTGG ATCATATTCA ATTATAGTTA CAAACATCGT
GATATGATAA ATTAAAAAAT GTCTTCTTCT TTTTTCCTTT TTGGAGACTT AAAATTTTAC AATTCCTATA TTTTCTGCAA
GGTCTGAGAG AGTGAAAATA GGGTAATGTG AAGGGCGTAA ACGTAACTTT ATCGCTATAT ATAGTTCCGT GATATCAACG
CAGCAGCTGA GGAAGAGATA TAGATAGATA TACAGAGATA TAGAGATATA CTCCAAATCC GATCACCGAA CACTCTCAAC
CAGAAAATCC CCAAAACAAT CTGAACCATG TCGTGGCAAA CTTACGTCGA CGACCACCTT CTCTGCGAAA TTGAAGGAAA
CCACCTAAGT CACGCCGCTA TCATCGGCCA GGACGGCAGC GTTTGGGCTC AGAGCTCCGG CTTTCCTCAG TTAAAACCTG
AGGAAGTATC TGGGATCATG AATGACTTTA ATGAGCCTGG AACACTTGCT CCCACTGGAT TGTATATTGG TGGCACTAAA
TATATGGTCA TCCAAGGTGA ACCCGGCTCT GTCATTAGAG GCAAGAAGGG TCCTGGTGGT GCTACTGTCA AGAAGACCGG
TTTGGCCTTG GTCATTGGCA TTTATGATGA GCCCATGACT CCGGGTCAAT GCAATATGAT AGTTGAAAGG CTTGGTGATT
ATCTCATTGA ACAGGGTCTT TGATTCCCTC TTTATGACTT GTTATAGTTG AAAGGCTTGG TCATAGTGCA TATTTCATTG
GCTTCTGTAC AAGTTTTTGC TTCTACCTCT ACTGGAATGC TTTGATTGCA GTGTAATAAT ATTGTTGGGT ATCAAAAGTC
AGGGCATGTG CGTGTTGCGA AGAAAAAGTG TTTTGGTGCT TAAGAAATTA TGACTATTAT TCTCTATGAT TGTACTTTTT
TAGTGGGGTA CCTGTATACA TTACACTGGT TTTAAATTTT ATTGATATGG TATAATGGTT CTCACATTTA TCAGAAGTTG
GCAGATTCTT ATGCATCTGG CAGATATTCT TCCTTCATAT TTATATATCA CTTGGTACTC CTACCTCCCT TTATTTATTT
TAAACGTAAA TTTATATAAA ACCCCGTTTA GGTCGAGTTT TAGTTTTA

>Vigan.01G032500.01
ATGTCGTGGC AAACTTACGT CGACGACCAC CTTCTCTGCG AAATTGAAGG AAACCACCTA AGTCACGCCG CTATCATCGG
CCAGGACGGC AGCGTTTGGG CTCAGAGCTC CGGCTTTCCT CAGTTAAAAC CTGAGGAAGT ATCTGGGATC ATGAATGACT
TTAATGAGCC TGGAACACTT GCTCCCACTG GATTGTATAT TGGTGGCACT AAATATATGG TCATCCAAGG TGAACCCGGC
TCTGTCATTA GAGGCAAGAA GGGTCCTGGT GGTGCTACTG TCAAGAAGAC CGGTTTGGCC TTGGTCATTG GCATTTATGA
TGAGCCCATG ACTCCGGGTC AATGCAATAT GATAGTTGAA AGGCTTGGTG ATTATCTCAT TGAACAGGGT CTTTGA

>Vigan.01G032500.01
MSWQTYVDDH LLCEIEGNHL SHAAIIGQDG SVWAQSSGFP QLKPEEVSGI MNDFNEPGTL APTGLYIGGT KYMVIQGEPG
SVIRGKKGPG GATVKKTGLA LVIGIYDEPM TPGQCNMIVE RLGDYLIEQG L*