GBrowse Details

Vigan.01G035200.01

Basic Information:
Name: Vigan.01G035200.01
Multiple alignment
Variant Information
Position: Chr01:2460096..2461859 (+ strand)
Length: 1764
Functional Information:
Description: Similar to Uncharacterized protein. [I1K628, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S8 (IPR000630)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,0.00,0.03,0.26,0.00,0.00
Arabidopsis thaliana homolog: AT4G29430.1
Automatic updates:
Name: NM_001250683 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306361 (LOC100306361), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:2460096..2460198 (+ strand)
Length: 103
Type: five_prime_UTR
Position: Chr01:2460199..2460328 (+ strand)
Length: 130
Type: CDS
Position: Chr01:2460684..2460844 (+ strand)
Length: 161
Type: CDS
Position: Chr01:2460995..2461093 (+ strand)
Length: 99
Type: CDS
Position: Chr01:2461094..2461859 (+ strand)
Length: 766
Type: three_prime_UTR


>Vigan.01G035200.01
GTGGCGTTGT CAAAACAGTG TTAAAAATGC TGTCCAAATA ACATTTTCCA TTTCGAAAAC CCTAGTGAGA GAAATAGGAG
GTTTGGTTAG AGAATTTAGA GAGATGGGAA GGAGGATCCT GAACGATGCC TTGAGGAGTA TGGTGAATGC AGAGAGAAGA
GGGAAAGCTA TGGTGGAACT CAAGCCAATT TCCACTGTTA TGTCTTCATT TCTCCGAATC ATGAAAAACC ATGGTTATAT
CAAAGACTTT CAAGTCTATG ATCCGCATAG AGTGGGGAGG ATAACGGTTG AACTACAAGG TAGGATTAAC GATTGCAAGG
CTCTTACATA CCGAAAAGAT ATGAAGGCAA GGGATCTTGA AGCCTACAGA TTGCAGACTC TTCCTACTCA TCAGTGGGGT
TATGTTGTGA TTACTACTCC TGACGGTGTT TTGGATCATG AAGAAGCCAT TAAGAAGAAT GTAGGCGGCC AGGTTCTTGG
TTACTTTCAC TGAAATGATC GTTGCCATGC TATTTTGGCT GTGTATCACG TTCAGTTATG TTTCCAGATA AACATTCAAA
GATTTTTTTT TCCTGTATGA ATGTTATAAG ATAGCAGCTC ATGCATGGAG AGTATGATGA GTTGCATTCG ATGCTTTGTG
GAAATTAGTC CTGTTTTGGT TAAATGGTAT TTTAAACATG AAGGAATGTT ATGCCTCCTA TTTCTTAATG TACTTCAAAT
TCCAAGTTCA TGTAGTCCAG GGTTAATTCT ATCATTCTAC GCAGTGGTTT CCTTTTTCTC AAGAATTGCA GTTTTGGATA
AGAAGATATT TCTTGTAAAC GATGACAACG TTTTAATTAA TCTCCATCCC TGTTTCTCAG TAGTCATTTA TGATATGCTT
AACAAATTCA AGCCCAATTA TTTTGCTACA TTTTTCAGCT CGTCAGTAAA CTACGAATGT TGAAATAGAC GTGTACAAAT
GCATTTGCCA TCCAATTTAG GGTGAAATAA GAAATACCTC AGCTAGTGAA AATTTCAGCT CCAGATTTCT AAGTATTACC
TTGTTCTAAT ATTTCATGGA AGAAGGCAGT GAACATCGGC ATCATTCATA TTACTAGTTA GATATGAAAA TTTCAAAATA
GTAAGTTTAT TGATATTTTA ATTTTAGATG TGTGCAGAAA CATTTGTGAT ATGTGTGGCA GTTCATTTGT AAAGTATGTA
AATTTTCAAT TGTAACGTTC GATCTTTGCG TAGCAGTTGT AAATTCCTTC TATCCTTGC

>Vigan.01G035200.01
ATGGGAAGGA GGATCCTGAA CGATGCCTTG AGGAGTATGG TGAATGCAGA GAGAAGAGGG AAAGCTATGG TGGAACTCAA
GCCAATTTCC ACTGTTATGT CTTCATTTCT CCGAATCATG AAAAACCATG GTTATATCAA AGACTTTCAA GTCTATGATC
CGCATAGAGT GGGGAGGATA ACGGTTGAAC TACAAGGTAG GATTAACGAT TGCAAGGCTC TTACATACCG AAAAGATATG
AAGGCAAGGG ATCTTGAAGC CTACAGATTG CAGACTCTTC CTACTCATCA GTGGGGTTAT GTTGTGATTA CTACTCCTGA
CGGTGTTTTG GATCATGAAG AAGCCATTAA GAAGAATGTA GGCGGCCAGG TTCTTGGTTA CTTTCACTGA 

>Vigan.01G035200.01
MGRRILNDAL RSMVNAERRG KAMVELKPIS TVMSSFLRIM KNHGYIKDFQ VYDPHRVGRI TVELQGRIND CKALTYRKDM
KARDLEAYRL QTLPTHQWGY VVITTPDGVL DHEEAIKKNV GGQVLGYFH*