GBrowse Details

Vigan.01G036200.01

Basic Information:
Name: Vigan.01G036200.01
Multiple alignment
Variant Information
Position: Chr01:2524500..2533091 (+ strand)
Length: 8592
Functional Information:
Description: Similar to Xaa-Pro dipeptidase. [V5N8B6, Phaseolus vulgaris]
GO: Molecular Function: aminopeptidase activity (GO:0004177)
Molecular Function: manganese ion binding (GO:0030145)
InterPro: Peptidase M24, structural domain (IPR000994)
Aminopeptidase P N-terminal domain (IPR007865)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:136.62,39.63,23.41,22.42,40.53,24.39,35.43,19.72
Arabidopsis thaliana homolog: AT4G29490.1
Automatic updates:
Name: NM_001254131 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max xaa-Pro dipeptidase-like (LOC100793240), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:2524500..2524652 (+ strand)
Length: 153
Type: five_prime_UTR
Position: Chr01:2524653..2524784 (+ strand)
Length: 132
Type: CDS
Position: Chr01:2524862..2524911 (+ strand)
Length: 50
Type: CDS
Position: Chr01:2525013..2525073 (+ strand)
Length: 61
Type: CDS
Position: Chr01:2525371..2525466 (+ strand)
Length: 96
Type: CDS
Position: Chr01:2525552..2525701 (+ strand)
Length: 150
Type: CDS
Position: Chr01:2525948..2526079 (+ strand)
Length: 132
Type: CDS
Position: Chr01:2526594..2526721 (+ strand)
Length: 128
Type: CDS
Position: Chr01:2527306..2527348 (+ strand)
Length: 43
Type: CDS
Position: Chr01:2527868..2527951 (+ strand)
Length: 84
Type: CDS
Position: Chr01:2528223..2528264 (+ strand)
Length: 42
Type: CDS
Position: Chr01:2528614..2528684 (+ strand)
Length: 71
Type: CDS
Position: Chr01:2529199..2529252 (+ strand)
Length: 54
Type: CDS
Position: Chr01:2529352..2529457 (+ strand)
Length: 106
Type: CDS
Position: Chr01:2529571..2529639 (+ strand)
Length: 69
Type: CDS
Position: Chr01:2531330..2531473 (+ strand)
Length: 144
Type: CDS
Position: Chr01:2532320..2532454 (+ strand)
Length: 135
Type: CDS
Position: Chr01:2532455..2533091 (+ strand)
Length: 637
Type: three_prime_UTR


>Vigan.01G036200.01
GGAAAGGTTG TGAAATTTGA TTGTGTAGAT AAACAGGAAA AAAATTGAAA ATTCTATGAG ATGTTTAATA TGATTAATGT
AATTTTCACT CTTTGTAATA TGATGAATGC AAATGATTTG AAAAGAAGAT AGAGAGAAGA GAACAGAATC AGCATGGGTT
CGTCTCAGTG GCCTCCGAAG GTGTCGATGG AGCTTCACGT CAATAACCGA GAGAAGCTTC TCGCATCTCT TCGTCAACAC
CTTTCCGATT CTTCTCGTCC TCTCCACGGC TTCGTTCTTC TTCAGGGTGG CGAAGAGCAA ACGCGTTACG ACACCGATCA
CTTGGAGCTC TTCAGGCAGG AGAGTTTCTT CGCTTACTTG TTTGGAGTGA CAGAGCCTGG ATTCTATGGA GCTATTGACA
TTGCGACTGG GGACTCTCTC TTGTTTGCTC CCAGGTTACC TTCTGAGTAT GCTGTTTGGT TGGGGAAGAT TAAGCAACTC
TCCTATTTTA AGGAACACTA CATGGTTAGC ACAACATTCT TTTCAGATGA GATTGCAAGT GTTTTGCAAC AACATTACCA
GGGTGCGGGA AAACCTTTAC TGTTTCTATT GCATGGACTT AATACAGATA GCAATAATTT CTCTAAACCG GCAGAGTTTC
AGGGCATTGA TAAGTTTGAT AAGGATTTGA CTACTTTGCA TCCTATATTG ACGGAGTGCC GTGTCATAAA GTCAAAGCTC
GAAATTGCGC TTATTCAGTA TGCCAATGAT ATAAGCTCCG AAGCTCATGT TGAGGTCATG AGAAAAACTA AGGTTGGAAT
GAAGGAGTAT CAGCTTGAAA GCATTTTTCT TCATCATACC TACATGTATG GTGGATGTCG GCATTGTTCC TATACATGTA
TTTGTGCTAC TGGTGAAAAT AGTGCTGTTC TTCATTACGG CCATGCGGCA GCTCCTAATG ACAAGACATT GGAAGATGGG
GACATGGCAC TGTTTGACAT GGGAGCTGAG TACAATTTCT ATGGGTCTGA CATAACCTGT TCTTTCCCTA TAAATGGGAA
GTTTACAAGC GATCAATCTC TTATATATAA TGCTGTGCTA GATGCTCACA ATGCTGTTAT ATCTTCAATG AAACCTGGAG
TAAACTGGGT TGATATGCAC ATATTGGCTG AAAAAGTTAT TCTCGAGTCA CTGAAGAGGG GAAACGTTCT TTTGGGTGAT
GTTGAGGACA TGATGGCTGC ACGCTTGGGT GCAGTTTTTA TGCCACATGG TCTCGGGCAT TTCCTTGGTA TTGATACACA
TGATCCTGGA GGCTACTTAC AGGGCCTGGA AAGAAGAAAG GAACCTGGAT TAAAATCTTT ACGGACAATC AGGGATCTCC
GAGAAGGAAT GGTTATCACT GTGGAGCCTG GATGCTACTT TATTGACGCC TTGTTACTTC CTGCCATGGA TAATCCAATG
ACTACCAAGT TCTTGAACCA GGAAGCCATT AATAGATATA AAGATTTTGG TGGAGTTCGA ATCGAGAGTG ATGTGCTTGT
CACTGCCGCT GGTTGCTACA ATATGACAAA GTGTCCCAGG GAAATAGGCG AGATTGAGGG GGTGATGGCC GGGGCACCAT
GGCCAGCGAA GAACATCTCT ACTCATGACA GAAATGGATT AGAAATCTAA GCTTGATTTC AATCTTCCTT AAGGTGAACA
GGTCTGCGTC ATCTTTAGTT TTTTTTCTTT TTTCTTTTTA ATGAATAACA GAGTGCAAGT TGCAGTTTAC CTGTCTCGTG
TCTAAAATGA TCTTCTTTGC ACTCTGAATC CCTCCTTCCC TTTCCCAAAT AAAAGATCCT CGATATAAGC ATTTCAATAT
CAAACTCAGT AGTACTTACG TTTCCTATGA CAAATGTTGA GTTGAGATGT TATAGAAGAG CGGGTTCTGA GAGTGAAATT
AGAAGTGCTT AAATCGTGAG ATTTCTCCCA ATCAATGTTA ATCATCCATT GCCTTTAGTG TTTTAAAAGA AGAGTACTTG
TTGGTGCCTG ACAAGAAGGA AGGTGTTAAT AGCCCCAAAA AATTGGAAAA TACATGTACT TACATTAAAT TTGAAGAATA
ATTAAGTAGA TCAATTGACA ATTTACAACG ACAATATATC TACGGTAGAG CAATCTCAAG CATTGCTTCT TCCACTGATT
GTAGTAAGTC GGTGAAAAAT TCAAGATCTT TAATGCTCCT GTCAATTCAT TTCTGAAACA AAACACTTGG ATGCCGAACT
GTCTATCAGT TATTATAATA ATACAATCGA GACCTTTTGA TTCATAA

>Vigan.01G036200.01
ATGGGTTCGT CTCAGTGGCC TCCGAAGGTG TCGATGGAGC TTCACGTCAA TAACCGAGAG AAGCTTCTCG CATCTCTTCG
TCAACACCTT TCCGATTCTT CTCGTCCTCT CCACGGCTTC GTTCTTCTTC AGGGTGGCGA AGAGCAAACG CGTTACGACA
CCGATCACTT GGAGCTCTTC AGGCAGGAGA GTTTCTTCGC TTACTTGTTT GGAGTGACAG AGCCTGGATT CTATGGAGCT
ATTGACATTG CGACTGGGGA CTCTCTCTTG TTTGCTCCCA GGTTACCTTC TGAGTATGCT GTTTGGTTGG GGAAGATTAA
GCAACTCTCC TATTTTAAGG AACACTACAT GGTTAGCACA ACATTCTTTT CAGATGAGAT TGCAAGTGTT TTGCAACAAC
ATTACCAGGG TGCGGGAAAA CCTTTACTGT TTCTATTGCA TGGACTTAAT ACAGATAGCA ATAATTTCTC TAAACCGGCA
GAGTTTCAGG GCATTGATAA GTTTGATAAG GATTTGACTA CTTTGCATCC TATATTGACG GAGTGCCGTG TCATAAAGTC
AAAGCTCGAA ATTGCGCTTA TTCAGTATGC CAATGATATA AGCTCCGAAG CTCATGTTGA GGTCATGAGA AAAACTAAGG
TTGGAATGAA GGAGTATCAG CTTGAAAGCA TTTTTCTTCA TCATACCTAC ATGTATGGTG GATGTCGGCA TTGTTCCTAT
ACATGTATTT GTGCTACTGG TGAAAATAGT GCTGTTCTTC ATTACGGCCA TGCGGCAGCT CCTAATGACA AGACATTGGA
AGATGGGGAC ATGGCACTGT TTGACATGGG AGCTGAGTAC AATTTCTATG GGTCTGACAT AACCTGTTCT TTCCCTATAA
ATGGGAAGTT TACAAGCGAT CAATCTCTTA TATATAATGC TGTGCTAGAT GCTCACAATG CTGTTATATC TTCAATGAAA
CCTGGAGTAA ACTGGGTTGA TATGCACATA TTGGCTGAAA AAGTTATTCT CGAGTCACTG AAGAGGGGAA ACGTTCTTTT
GGGTGATGTT GAGGACATGA TGGCTGCACG CTTGGGTGCA GTTTTTATGC CACATGGTCT CGGGCATTTC CTTGGTATTG
ATACACATGA TCCTGGAGGC TACTTACAGG GCCTGGAAAG AAGAAAGGAA CCTGGATTAA AATCTTTACG GACAATCAGG
GATCTCCGAG AAGGAATGGT TATCACTGTG GAGCCTGGAT GCTACTTTAT TGACGCCTTG TTACTTCCTG CCATGGATAA
TCCAATGACT ACCAAGTTCT TGAACCAGGA AGCCATTAAT AGATATAAAG ATTTTGGTGG AGTTCGAATC GAGAGTGATG
TGCTTGTCAC TGCCGCTGGT TGCTACAATA TGACAAAGTG TCCCAGGGAA ATAGGCGAGA TTGAGGGGGT GATGGCCGGG
GCACCATGGC CAGCGAAGAA CATCTCTACT CATGACAGAA ATGGATTAGA AATCTAA

>Vigan.01G036200.01
MGSSQWPPKV SMELHVNNRE KLLASLRQHL SDSSRPLHGF VLLQGGEEQT RYDTDHLELF RQESFFAYLF GVTEPGFYGA
IDIATGDSLL FAPRLPSEYA VWLGKIKQLS YFKEHYMVST TFFSDEIASV LQQHYQGAGK PLLFLLHGLN TDSNNFSKPA
EFQGIDKFDK DLTTLHPILT ECRVIKSKLE IALIQYANDI SSEAHVEVMR KTKVGMKEYQ LESIFLHHTY MYGGCRHCSY
TCICATGENS AVLHYGHAAA PNDKTLEDGD MALFDMGAEY NFYGSDITCS FPINGKFTSD QSLIYNAVLD AHNAVISSMK
PGVNWVDMHI LAEKVILESL KRGNVLLGDV EDMMAARLGA VFMPHGLGHF LGIDTHDPGG YLQGLERRKE PGLKSLRTIR
DLREGMVITV EPGCYFIDAL LLPAMDNPMT TKFLNQEAIN RYKDFGGVRI ESDVLVTAAG CYNMTKCPRE IGEIEGVMAG
APWPAKNIST HDRNGLEI*