VIGGS:GBrowse

Vigan.01G041100.01

Basic Information:

Name:	Vigan.01G041100.01 Multiple alignment Variant Information
Position:	Chr01:3001970..3004032 (+ strand)
Length:	2063

Functional Information:

Description:	Similar to 30S ribosomal protein S6 alpha, chloroplastic-like. [XP_004503594.1, Cicer arietinum]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
	Molecular Function: rRNA binding (GO:0019843)
InterPro:	Ribosomal protein S6 (IPR000529)
	Translation elongation factor EF1B/ribosomal protein S6 (IPR014717)
	Ribosomal protein S6, plastid/chloroplast (IPR020814)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:16.87,10.32,31.69,110.15,12.42,31.62,7.15,13.32
Arabidopsis thaliana homolog:	AT1G64510.1

Automatic updates:

Name:	NM_001249216 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305490 (LOC100305490), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249491 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500072 (LOC100500072), mRNA; nuclear gene for chloroplast product.
PubMed ID:	14624337 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:3001970..3002112 (+ strand)
Length:	143
Type:	five_prime_UTR

Position:	Chr01:3002113..3002517 (+ strand)
Length:	405
Type:	CDS

Position:	Chr01:3003514..3003753 (+ strand)
Length:	240
Type:	CDS

Position:	Chr01:3003754..3004032 (+ strand)
Length:	279
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G041100.01
TGAGTAGAGA ATGAGAGAAA AGAAAAGAAA AAGCTTCATA AACCCGACTT CTAACCTGCG CTTGTGTGCG CTGAGTTCGC
CTTATCTGCA TAGGATAGAA CAGCTTCATC TGCAAAGTCC TCTCATCTTA GCAGGGCAAA ACAATGGCTT CGTCTGCCTT
CACTTCGGTT CCTCTCTCTT CTTCTTCTCT CAATGTTCCT CATTCTTCTT CCAAACTCCC TTCCAATTTT CTATCTTCTC
CCATTGGCGC ATTCTCTCGT GGTCCCAAAT TTCTCTTTGC AGAACCAAGA TACCATTTTC ACCCAAAGGG AAACGCTTCT
AAATTTTCCA TTGCTGCCCA AACCCTAGAC TTCTCCGATT CGTTCTTCGA AGGGGGTTTC GGCTCCGAAG ACGACCCCAA
TTCACCAGGC GGAACCGGGT TCACGGCCGT CGAGGAAAAG GAGGAGCCCC CCTGCCCACC CGGCCTTCGA CAGTACGAGA
CAATGATGGT TTTGAGGCCC GACATGACCG AGGATGAACG ACTTGCACTC ACCCAGAAGT ACGAGGAGAT TCTTGTTGCT
GGAGGTGGCA TGTATGTAGA GGTTTTTAAC AGAGGAGTTA TTCCTCTAGC ATATGGGATC AAGAAGAAAA ACAAAGCTGG
GGAGACCAAC ACTTATTTGG ATGGCATCTA CCTGCTGTTC ACCTACTTCA CCAAGCCTGA ATCCGTAAAG CCTCTCGAGG
ACACAGTGTT AACGGATGAT AATGTTATCC GATCAATGAG TTCCAAAGTT AGGAAGAGGA AATATTAGTT TCTTTTCAGG
TCTCAGGTAG CTCCTTCAAA AAGATGGTTC ACAAAAAGTA ATGTTGTATT TATTATTATT GTTTTTCCTT TTTCAGTGTC
ATTTGGATTC AAGTATTTTT GTAACATGAT TTAAAGAGAG ATGTAGGTGC TATCTATCAC TTGCAGTCTG CAAAATTACC
ATGCTCAATG CAGTTTGCTA TATGTTGACA ATTAATTTGT AAATTCTTTT GCTAACAAGT CTACAATCTT ATATGGAACT
AATAAATTTT GACATTACCT GTTTAGA

[show][hide][copy]CDS

>Vigan.01G041100.01
ATGGCTTCGT CTGCCTTCAC TTCGGTTCCT CTCTCTTCTT CTTCTCTCAA TGTTCCTCAT TCTTCTTCCA AACTCCCTTC
CAATTTTCTA TCTTCTCCCA TTGGCGCATT CTCTCGTGGT CCCAAATTTC TCTTTGCAGA ACCAAGATAC CATTTTCACC
CAAAGGGAAA CGCTTCTAAA TTTTCCATTG CTGCCCAAAC CCTAGACTTC TCCGATTCGT TCTTCGAAGG GGGTTTCGGC
TCCGAAGACG ACCCCAATTC ACCAGGCGGA ACCGGGTTCA CGGCCGTCGA GGAAAAGGAG GAGCCCCCCT GCCCACCCGG
CCTTCGACAG TACGAGACAA TGATGGTTTT GAGGCCCGAC ATGACCGAGG ATGAACGACT TGCACTCACC CAGAAGTACG
AGGAGATTCT TGTTGCTGGA GGTGGCATGT ATGTAGAGGT TTTTAACAGA GGAGTTATTC CTCTAGCATA TGGGATCAAG
AAGAAAAACA AAGCTGGGGA GACCAACACT TATTTGGATG GCATCTACCT GCTGTTCACC TACTTCACCA AGCCTGAATC
CGTAAAGCCT CTCGAGGACA CAGTGTTAAC GGATGATAAT GTTATCCGAT CAATGAGTTC CAAAGTTAGG AAGAGGAAAT
ATTAG

[show][hide][copy]PROTEIN

>Vigan.01G041100.01
MASSAFTSVP LSSSSLNVPH SSSKLPSNFL SSPIGAFSRG PKFLFAEPRY HFHPKGNASK FSIAAQTLDF SDSFFEGGFG
SEDDPNSPGG TGFTAVEEKE EPPCPPGLRQ YETMMVLRPD MTEDERLALT QKYEEILVAG GGMYVEVFNR GVIPLAYGIK
KKNKAGETNT YLDGIYLLFT YFTKPESVKP LEDTVLTDDN VIRSMSSKVR KRKY*