GBrowse Details

Vigan.01G042800.01

Basic Information:
Name: Vigan.01G042800.01
Multiple alignment
Variant Information
Position: Chr01:3105654..3113270 (- strand)
Length: 7617
Functional Information:
Description: Similar to Dynamin-related protein 5A. [Q39828, Glycine max]
GO: Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Dynamin central domain (IPR000375)
Dynamin, GTPase domain (IPR001401)
Dynamin GTPase effector (IPR003130)
Dynamin, GTPase region, conserved site (IPR019762)
GTPase effector domain, GED (IPR020850)
Dynamin superfamily (IPR022812)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:72.51,58.26,34.82,29.31,54.12,31.01,45.13,46.55
Arabidopsis thaliana homolog: AT1G14830.1, AT2G44590.3, AT3G60190.1, AT3G61760.1, AT5G42080.1
Automatic updates:
Name: NM_001249253 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SDL5A (LOC100037461), mRNA.
PubMed ID: 8631291 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:3105654..3105821 (- strand)
Length: 168
Type: three_prime_UTR
Position: Chr01:3105822..3105950 (- strand)
Length: 129
Type: CDS
Position: Chr01:3106315..3106454 (- strand)
Length: 140
Type: CDS
Position: Chr01:3106567..3106795 (- strand)
Length: 229
Type: CDS
Position: Chr01:3107887..3107937 (- strand)
Length: 51
Type: CDS
Position: Chr01:3108267..3108492 (- strand)
Length: 226
Type: CDS
Position: Chr01:3108598..3108668 (- strand)
Length: 71
Type: CDS
Position: Chr01:3108921..3109040 (- strand)
Length: 120
Type: CDS
Position: Chr01:3109132..3109326 (- strand)
Length: 195
Type: CDS
Position: Chr01:3109821..3109885 (- strand)
Length: 65
Type: CDS
Position: Chr01:3111676..3111766 (- strand)
Length: 91
Type: CDS
Position: Chr01:3112018..3112079 (- strand)
Length: 62
Type: CDS
Position: Chr01:3112187..3112237 (- strand)
Length: 51
Type: CDS
Position: Chr01:3112332..3112433 (- strand)
Length: 102
Type: CDS
Position: Chr01:3112607..3112714 (- strand)
Length: 108
Type: CDS
Position: Chr01:3112798..3112861 (- strand)
Length: 64
Type: CDS
Position: Chr01:3112947..3113075 (- strand)
Length: 129
Type: CDS
Position: Chr01:3113076..3113270 (- strand)
Length: 195
Type: five_prime_UTR


>Vigan.01G042800.01
ATCCCGTTGG CATCACGTCC CTTTTCAAAC CAAATTCCAG ACCCACACTC CGTACAAAAA GACTCCGCGT TCCCCTTTCG
AACCCCTGAA CCACAATCGA CACACCACCA ATCGGGATCC TCGCGCTATC TCTTCTCTCC GTAACCGTCA CCGGCGTTCT
GAATCCGATC CAGCGAACAG ATCTCAGAGA TCCGAATGGA GAATCTCATC TCTTTGGTGA ACAAAATCCA GAGAGCTTGC
ACCGCCTTAG GCGATCACGG AGAAAACACT GCACTCCCCA CACTGTGGGA CTCTCTTCCC GCCATCGCCG TTGTCGGAGG
CCAGAGCTCA GGAAAGTCCT CCGTCTTGGA GAGCGTGGTC GGCAAAGATT TCTTACCTCG TGGATCAGGG ATTGTTACGC
GGCGACCGCT GGTTTTGCAG CTTCACAAGC TTGAGGAAGG AAGCAGAGAG TACGCTGAGT TCCTACACCT CCCGAGGAAG
AGGTTCACCG ATTTTGTTGC TGTGAGGAAG GAGATTCAAG ATGAAACTGA TAGAGAGACT GGACGGACCA AACAAATTTC
TACTGTTCCG ATTCATCTTA GTATATACTC ACCTAATGTT GTCAACTTGA CGCTCATTGA TCTTCCCGGG CTTACTAAAG
TAGCTGTAGA GGGGCAACCG GACAGTATTG TTAAAGACAT CGAGGATATG GTTCGCTCCT ACATTGAGAA GCCAAACTGT
ATAATTTTGG CTATTTCACC AGCCAATCAA GATCTCGCAA CCTCTGATGC GATTAAAATT TCCCGTGAAG TGGATCCTAC
CGGGGAGAGG ACCATTGGAG TTTTGACAAA GATTGATCTT ATGGACAAGG GTACTGATGC TGTTGATATG TTGGAAGGAA
GAGCATATAG GTTAAAGTTT CCCTGGATTG GTGTTGTGAA TAGATCCCAA CAAGACATAA ACAAGAATGT TGACATGATT
GCTGCTAGGC GTAGAGAACG TGAGTACTTC AATAGTACCC CTGAATATAA ACACCTTGCA CACAGAATGG GTTCTGAGCA
TCTGGCAAAG ATGCTCTCAA AGCACTTGGA AACAGTAATC AAGTCCAAAA TTCCTGGCAT TCAATCTCTT ATTAACAAAA
CAATAGCCGA ACTTGAAGCT GAACTAACTC GTTTGGGAAA GCCTGTTGCA GCTGATGCTG GGGGCAAGTT GTACTCAATC
ATGGAAATAT GCCGCTCGTT TGATCAAATA TTTAAAGATC ATCTTGATGG CGTGCGGCCT GGAGGTGATA AAATTTATAA
TGTCTTTGAC AATCAGCTCC CTGCTGCTTT AAAAAGGTTG CAGTTTGATA AGCAGCTTTC GATGGAAAAT ATAAGGAAGC
TTATTACAGA AGCTGATGGG TACCAGCCTC ATCTAATAGC TCCAGAACAA GGATATCGCC GGCTCATTGA ATCTTCTCTA
ATAACTATTA GGGGCCCAGC TGAGGCAGCT GTTGATGCTG TTCATGCCCT GTTAAAGGAC CTGGTTCACA AAGCTATCAG
TGAGACTGTG GACTTGAAGC AGTATCCTGG CCTCCGGGTT GAGGTTGGGG CTGCAGCTGT TGATTCACTT GAAAGAATGA
GGGACGAAAG CAAAAGAGCA ACACTGCAGC TAGTTGATAT GGAATGTGGC TACCTGACTG TTGATTTCTT TCGGAAGCTT
CCTCAAGATG TTGATAAGGG TGGCAATCCC ACTCATTCAA TTTTTGATAG ATATAATGAT TCATATCTAA GGCGAATTGG
AACAACAATT TTGTCGTATG TCAATATGGT CTGTGCTACA CTGAGGCATT CAATTCCCAA GTCCATTGTC TATTGTCAAG
TGCGGGAGGC AAAACGAAGT TTACTTGATC ACTTTTTCAC AGACCTAGGC AAAATGGAGA CCAAGCGTTT GTCCTCTTTG
CTGAATGAGG ATCCTGCAAT TATGGAACGA CGTAGTGCTC TTGCAAAGAG ACTAGAATTG TACCGGAGTG CACAAGCTGA
AATAGATGCA GTTGCTTGGT CCAAGTAGAT ATGTATGTTC ATCACGTTTG TACGAAAGCT AGAGTTAGTG GTATTGCTAT
TTCCAGTTCA ATATTCATTT TTTATTGTCA TCTGGTCCAT TTATATTGTC ATCTTAGATA GATGGGACGA CGATTATGAA
AAGGGAGAAA ATTGATTTTT TTGGGTTATA TCTGGG

>Vigan.01G042800.01
ATGGAGAATC TCATCTCTTT GGTGAACAAA ATCCAGAGAG CTTGCACCGC CTTAGGCGAT CACGGAGAAA ACACTGCACT
CCCCACACTG TGGGACTCTC TTCCCGCCAT CGCCGTTGTC GGAGGCCAGA GCTCAGGAAA GTCCTCCGTC TTGGAGAGCG
TGGTCGGCAA AGATTTCTTA CCTCGTGGAT CAGGGATTGT TACGCGGCGA CCGCTGGTTT TGCAGCTTCA CAAGCTTGAG
GAAGGAAGCA GAGAGTACGC TGAGTTCCTA CACCTCCCGA GGAAGAGGTT CACCGATTTT GTTGCTGTGA GGAAGGAGAT
TCAAGATGAA ACTGATAGAG AGACTGGACG GACCAAACAA ATTTCTACTG TTCCGATTCA TCTTAGTATA TACTCACCTA
ATGTTGTCAA CTTGACGCTC ATTGATCTTC CCGGGCTTAC TAAAGTAGCT GTAGAGGGGC AACCGGACAG TATTGTTAAA
GACATCGAGG ATATGGTTCG CTCCTACATT GAGAAGCCAA ACTGTATAAT TTTGGCTATT TCACCAGCCA ATCAAGATCT
CGCAACCTCT GATGCGATTA AAATTTCCCG TGAAGTGGAT CCTACCGGGG AGAGGACCAT TGGAGTTTTG ACAAAGATTG
ATCTTATGGA CAAGGGTACT GATGCTGTTG ATATGTTGGA AGGAAGAGCA TATAGGTTAA AGTTTCCCTG GATTGGTGTT
GTGAATAGAT CCCAACAAGA CATAAACAAG AATGTTGACA TGATTGCTGC TAGGCGTAGA GAACGTGAGT ACTTCAATAG
TACCCCTGAA TATAAACACC TTGCACACAG AATGGGTTCT GAGCATCTGG CAAAGATGCT CTCAAAGCAC TTGGAAACAG
TAATCAAGTC CAAAATTCCT GGCATTCAAT CTCTTATTAA CAAAACAATA GCCGAACTTG AAGCTGAACT AACTCGTTTG
GGAAAGCCTG TTGCAGCTGA TGCTGGGGGC AAGTTGTACT CAATCATGGA AATATGCCGC TCGTTTGATC AAATATTTAA
AGATCATCTT GATGGCGTGC GGCCTGGAGG TGATAAAATT TATAATGTCT TTGACAATCA GCTCCCTGCT GCTTTAAAAA
GGTTGCAGTT TGATAAGCAG CTTTCGATGG AAAATATAAG GAAGCTTATT ACAGAAGCTG ATGGGTACCA GCCTCATCTA
ATAGCTCCAG AACAAGGATA TCGCCGGCTC ATTGAATCTT CTCTAATAAC TATTAGGGGC CCAGCTGAGG CAGCTGTTGA
TGCTGTTCAT GCCCTGTTAA AGGACCTGGT TCACAAAGCT ATCAGTGAGA CTGTGGACTT GAAGCAGTAT CCTGGCCTCC
GGGTTGAGGT TGGGGCTGCA GCTGTTGATT CACTTGAAAG AATGAGGGAC GAAAGCAAAA GAGCAACACT GCAGCTAGTT
GATATGGAAT GTGGCTACCT GACTGTTGAT TTCTTTCGGA AGCTTCCTCA AGATGTTGAT AAGGGTGGCA ATCCCACTCA
TTCAATTTTT GATAGATATA ATGATTCATA TCTAAGGCGA ATTGGAACAA CAATTTTGTC GTATGTCAAT ATGGTCTGTG
CTACACTGAG GCATTCAATT CCCAAGTCCA TTGTCTATTG TCAAGTGCGG GAGGCAAAAC GAAGTTTACT TGATCACTTT
TTCACAGACC TAGGCAAAAT GGAGACCAAG CGTTTGTCCT CTTTGCTGAA TGAGGATCCT GCAATTATGG AACGACGTAG
TGCTCTTGCA AAGAGACTAG AATTGTACCG GAGTGCACAA GCTGAAATAG ATGCAGTTGC TTGGTCCAAG TAG

>Vigan.01G042800.01
MENLISLVNK IQRACTALGD HGENTALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHKLE
EGSREYAEFL HLPRKRFTDF VAVRKEIQDE TDRETGRTKQ ISTVPIHLSI YSPNVVNLTL IDLPGLTKVA VEGQPDSIVK
DIEDMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD PTGERTIGVL TKIDLMDKGT DAVDMLEGRA YRLKFPWIGV
VNRSQQDINK NVDMIAARRR EREYFNSTPE YKHLAHRMGS EHLAKMLSKH LETVIKSKIP GIQSLINKTI AELEAELTRL
GKPVAADAGG KLYSIMEICR SFDQIFKDHL DGVRPGGDKI YNVFDNQLPA ALKRLQFDKQ LSMENIRKLI TEADGYQPHL
IAPEQGYRRL IESSLITIRG PAEAAVDAVH ALLKDLVHKA ISETVDLKQY PGLRVEVGAA AVDSLERMRD ESKRATLQLV
DMECGYLTVD FFRKLPQDVD KGGNPTHSIF DRYNDSYLRR IGTTILSYVN MVCATLRHSI PKSIVYCQVR EAKRSLLDHF
FTDLGKMETK RLSSLLNEDP AIMERRSALA KRLELYRSAQ AEIDAVAWSK *