GBrowse Details

Vigan.01G043200.01

Basic Information:
Name: Vigan.01G043200.01
Multiple alignment
Variant Information
Position: Chr01:3136349..3141081 (+ strand)
Length: 4733
Functional Information:
Description: Similar to Uncharacterized protein. [K7L4J5, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: galactose metabolic process (GO:0006012)
Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978)
Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives (GO:0016857)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
UDP-glucose 4-epimerase GalE (IPR005886)
Nucleotide sugar epimerase (IPR008089)
NAD(P)-binding domain (IPR016040)
UDP-glucose 4-epimerase C-terminal domain (IPR025308)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,1.22,12.34,1.98,2.96,5.25,7.87,3.69
Arabidopsis thaliana homolog: AT1G64440.1, AT4G10960.1, AT4G23920.1
Automatic updates:
Name: NM_001255031 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UDP-glucose 4-epimerase GEPI48-like (LOC100812565), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3136349..3136548 (+ strand)
Length: 200
Type: five_prime_UTR
Position: Chr01:3136549..3136728 (+ strand)
Length: 180
Type: CDS
Position: Chr01:3137351..3137400 (+ strand)
Length: 50
Type: CDS
Position: Chr01:3137542..3137677 (+ strand)
Length: 136
Type: CDS
Position: Chr01:3138198..3138299 (+ strand)
Length: 102
Type: CDS
Position: Chr01:3138478..3138705 (+ strand)
Length: 228
Type: CDS
Position: Chr01:3139175..3139253 (+ strand)
Length: 79
Type: CDS
Position: Chr01:3139563..3139645 (+ strand)
Length: 83
Type: CDS
Position: Chr01:3140310..3140401 (+ strand)
Length: 92
Type: CDS
Position: Chr01:3140704..3140800 (+ strand)
Length: 97
Type: CDS
Position: Chr01:3140801..3141081 (+ strand)
Length: 281
Type: three_prime_UTR


>Vigan.01G043200.01
AAAGTAGCAC TTGAGACTTT AGATTCAAAA AAATCTCATG ACTTTGTTGT GAACGTGTTA CTCACAGAAT TCTCGCCTTC
TCCTGGCGCG TAACAAACTC GTAGCTTTTC CACTGCCATA ACTCATCCTT CTCTTTCGCT ATTCTGTTCA CGCATTCTTG
TATTCTTCCG TTTTTTTCTC TCCTGCCAAA AACTTTCGTT ATGCCAATGA TTCTGGTTAC CGGTGGTGCC GGATACATTG
GTAGCCACAC CGTCCTCCAG CTTCTCCTCG CCGGTTACAA CGTATTGGCC GTCGACAACT TCGACAACTC CTCTGCAGTC
TCCATATCCA GAGTCAAGGA ACTCGCCGGA AAATTGGCAA AGAACTTTTC CTTTGTCGAG TTAGACTTGC GGAACAGAGC
TGCGCTCGAG AAAGTTTTTA CAAACCAAAA GTTTGATGCT GTCATACATT TTGCTGGGCT GAAAGCAGTC GGTGAAAGTG
TGCAGAAACC ACTACTGTAC TTTGACAACA ACTTGATTGG GACAATCATT CTATTTCAAG TCATGGTTGC CCATGGATGC
AAGAAGCTTG TGTTCTCATC TTCAGCAACT GTATATGGCT GGCCAAAGGA GGTTCCATGT ACCGAAGAAT TCCCTTTGTC
ATCGACAAAC CCATATGGAA GGACCAAGCT TATCATCGAA GAGATGTGTC GTGATCTCTA CTGTGCGGAT TCAAATTGGA
AAATTATACT GTTGAGATAC TTTAATCCAG TTGGTGCACA TCCTAGTGGT TTTATTGGTG AGGATCCTCG TGGAGTTCCG
AACAATCTCA TGCCCTTTGT TCAACAAGTG GCAGTTGGCA GACTCCCTTC ACTGACAGTT TTTGGAAACG ATTATAAAAC
ATGCGACGGC ACTGGAGTTC GCGATTACAT TCATGTTGTT GACTTAGCAG AAGGGCACAT TGCTGCTTTG CGTAAACTGG
ATGATCCTAA AATAGGTTGC GAAGTTTATA ACTTGGGAAC AGGAAAGGGA ACATCAGTTT TGGAGATGGT AAAGGCTTTT
GAACAGGCCT CTGGAAAGAA AATTCCACTT GCAATGGGTG GTCGTAGACC TGGAGACGCT GAAATTGTTT ATGCTTCAAC
GAAGAAAGCG GAAAAAGAAC TTAATTGGAA GGCTAAACAC GGGATCGATG ATATGTGTCG GGATCAATGG AACTGGGCTA
GCAAAAACCC TTATGGCTAT GGTAGATCTG GAGATTCCCC CAAGTGATGC TTATGATTGT TAGATTAAGT ATAGATGTTT
TCTTTTGGGG TCTTTTTGAA CCCTGTCTCC CAATAGGTCC TAAAGTTCTT ACTTAGCCTT TCTAAGATAG AAAATCCTTT
CTTAATTATG AATTTCAATA ATGTGGTAAA TAAGTAGTGG TTTTGTTTTG CTTTAGTTAT TCTTTTCGGT TTCCCGCTTA
CAGTATGAGC ATTTTCATGA TCTTCAAGAA CGTATTTATA AATCTAAACC ACACATTATA GATTATGACT AACGAGTAAT
ATCATGCC

>Vigan.01G043200.01
ATGCCAATGA TTCTGGTTAC CGGTGGTGCC GGATACATTG GTAGCCACAC CGTCCTCCAG CTTCTCCTCG CCGGTTACAA
CGTATTGGCC GTCGACAACT TCGACAACTC CTCTGCAGTC TCCATATCCA GAGTCAAGGA ACTCGCCGGA AAATTGGCAA
AGAACTTTTC CTTTGTCGAG TTAGACTTGC GGAACAGAGC TGCGCTCGAG AAAGTTTTTA CAAACCAAAA GTTTGATGCT
GTCATACATT TTGCTGGGCT GAAAGCAGTC GGTGAAAGTG TGCAGAAACC ACTACTGTAC TTTGACAACA ACTTGATTGG
GACAATCATT CTATTTCAAG TCATGGTTGC CCATGGATGC AAGAAGCTTG TGTTCTCATC TTCAGCAACT GTATATGGCT
GGCCAAAGGA GGTTCCATGT ACCGAAGAAT TCCCTTTGTC ATCGACAAAC CCATATGGAA GGACCAAGCT TATCATCGAA
GAGATGTGTC GTGATCTCTA CTGTGCGGAT TCAAATTGGA AAATTATACT GTTGAGATAC TTTAATCCAG TTGGTGCACA
TCCTAGTGGT TTTATTGGTG AGGATCCTCG TGGAGTTCCG AACAATCTCA TGCCCTTTGT TCAACAAGTG GCAGTTGGCA
GACTCCCTTC ACTGACAGTT TTTGGAAACG ATTATAAAAC ATGCGACGGC ACTGGAGTTC GCGATTACAT TCATGTTGTT
GACTTAGCAG AAGGGCACAT TGCTGCTTTG CGTAAACTGG ATGATCCTAA AATAGGTTGC GAAGTTTATA ACTTGGGAAC
AGGAAAGGGA ACATCAGTTT TGGAGATGGT AAAGGCTTTT GAACAGGCCT CTGGAAAGAA AATTCCACTT GCAATGGGTG
GTCGTAGACC TGGAGACGCT GAAATTGTTT ATGCTTCAAC GAAGAAAGCG GAAAAAGAAC TTAATTGGAA GGCTAAACAC
GGGATCGATG ATATGTGTCG GGATCAATGG AACTGGGCTA GCAAAAACCC TTATGGCTAT GGTAGATCTG GAGATTCCCC
CAAGTGA

>Vigan.01G043200.01
MPMILVTGGA GYIGSHTVLQ LLLAGYNVLA VDNFDNSSAV SISRVKELAG KLAKNFSFVE LDLRNRAALE KVFTNQKFDA
VIHFAGLKAV GESVQKPLLY FDNNLIGTII LFQVMVAHGC KKLVFSSSAT VYGWPKEVPC TEEFPLSSTN PYGRTKLIIE
EMCRDLYCAD SNWKIILLRY FNPVGAHPSG FIGEDPRGVP NNLMPFVQQV AVGRLPSLTV FGNDYKTCDG TGVRDYIHVV
DLAEGHIAAL RKLDDPKIGC EVYNLGTGKG TSVLEMVKAF EQASGKKIPL AMGGRRPGDA EIVYASTKKA EKELNWKAKH
GIDDMCRDQW NWASKNPYGY GRSGDSPK*