GBrowse Details

Vigan.01G044800.01

Basic Information:
Name: Vigan.01G044800.01
Multiple alignment
Variant Information
Position: Chr01:3234207..3239605 (- strand)
Length: 5399
Functional Information:
Description: Similar to Lysine histidine transporter 1-like protein. [T2DMR0, Phaseolus vulgaris]
InterPro: Amino acid transporter, transmembrane (IPR013057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.31,0.75,5.13,6.65,3.11,21.52,0.49,8.03
Arabidopsis thaliana homolog: AT5G41800.1
Automatic updates:
Name: NM_001255455 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative GABA transporter (LOC100815232), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3234207..3234513 (- strand)
Length: 307
Type: three_prime_UTR
Position: Chr01:3234514..3234903 (- strand)
Length: 390
Type: CDS
Position: Chr01:3235292..3235528 (- strand)
Length: 237
Type: CDS
Position: Chr01:3235603..3235733 (- strand)
Length: 131
Type: CDS
Position: Chr01:3236114..3236300 (- strand)
Length: 187
Type: CDS
Position: Chr01:3237420..3237517 (- strand)
Length: 98
Type: CDS
Position: Chr01:3239066..3239296 (- strand)
Length: 231
Type: CDS
Position: Chr01:3239430..3239514 (- strand)
Length: 85
Type: CDS
Position: Chr01:3239515..3239605 (- strand)
Length: 91
Type: five_prime_UTR


>Vigan.01G044800.01
TAGCAACTGA CCTAATATAT ATACAGACAC CCACTCACGT ATAGCTTTCA TTCTAGTTCT TCCTTAGTTA ATAACTCACG
GCAGTTCATC CATGACGGAA CCACCAAAAG CCGATATCCA TAACCGCCAC GACGAGGATG CAGATGCCGG AGCTGCTTTC
GTTCTCCAAT CCAAAGGTCA GTGGTGGCAC GCGGGGTTCC ACCTAACAAC TGCGATCGTC GGACCAACAA TTCTGACTCT
GCCTTACGCG TTCCGAGGAT TAGGGTGGGG ACTTGGATTC TTGTGCCTAA CGACCATGGG AGTTGTTACC TTCTACTCCT
ATTTCCTCAT GTCCAAAGTT CTCGATTACT GTGAAAAATC CGGTCGCCGA CACATCCGTT TCCGAGAACT AGCAGCTGAT
GTTTTAGGGT CAGGATGGAT GTTTTATTTT GTAATCTTCA TTCAAACGGC AATCAACACT GGCGTTGGCG TTGGAGCAAT
CTTGCTTGCG GGTGAATGCC TTGAGATCAT GTACTCCAAT ATTTCAGTTC ATGGATCCCT CAAATTGTAC CACTTTATAG
CAATGGTGAC AGTGGTAATG ATAGTTTTAT CTCAGCTTCC TTCTTTCCAT TCCCTGCGAC ACATCAACTT GTGTTCACTA
CTTTTCGCCC TTGGCTATAC CCTACTCGTG GTTGTTGCCT GTATTCATGC AGGTACTTCA GAAAATGCCC CTCCAAGAGA
CTATTCTTTA GAACCTAAGA AGTCTGCAAG GACCTTCAGT GCCTTCACGT CCCTCTCCAT ACTTGCAGCA ATATTTGGGA
ATGGCATATT ACCCGAGATA CAAGCAACTC TGGCTCCCCC TGCCACTGGG AAGATGGTAA AAGGCCTTAT TATGTGTTAT
ACAGCAATTT TTTTTACTTT CTACTCTGCA GCAGTTTCTG GATATTGGGT GTTTGGAAAC AAATCCAACT CAAACATTTT
AAAGAGTCTG CTACCAGATA GTGGACCTTC TTTGGCCCCA ACTTGGGTTC TTGCACTTGC AATCACCTTT GTTCTTCTTC
AGCTCTTTGC CATTGGCCTG GTTTATTCTC AAGTTGCTTA TGAGATAATG GAGAAGAAAT CAGCTGATGT GAGGCAGGGG
ATGTTTTCCA AAAGAAATCT CATTCCTCGC ATTATTCTCA GAACAATTTA CACGATATGC TGTGGGTTTT TGGCAGCCAT
GTTGCCATTT TTTGGAGACA TCAACGGTGT GGTTGGTGCT GTTGGTTTCA TCCCTTTGGA TTTCATTCTG CCGATGCTTA
TGTACAACAT GACATACAAG CCTCCAAAAT CATCCTTAAC TTACTGGATC AACCTCTCAA TTATAGTGGT GTTCACGGGT
GCTGGAATCA TGGGTGCATT CTCTTCCATA AGGAAATTGG TTCTTGATGC CAACCAGTTT AAGCTATTCA GCAGTGATGT
TGTGGATTGA CCAAAAGTTA TTTCAAGTTG TGAAACATGT AACATGCACT AATCTCATGA GAGCTTGTAA ATTTCAAAAT
AACAAACAAA AGTTTATTTA AGAAAATAGT AGAGAATCCA TTCCCGGTGG TGGTGGATTA GAATGTGCAA GAAAAATGTG
GGAAGGTAAA AAATGGTTAC AAAAAGAAAG GACCTTTATC TTGTAATGTT ACCGGGTTCT AAAGCCCACA CTAGCATATC
CAGTAAAATC GGAGTTGGAG ATGAAAATTG CAAGTATTCT TATATGGGTA CATTTGGCAA GATCCAATCA ACCGAAA

>Vigan.01G044800.01
ATGACGGAAC CACCAAAAGC CGATATCCAT AACCGCCACG ACGAGGATGC AGATGCCGGA GCTGCTTTCG TTCTCCAATC
CAAAGGTCAG TGGTGGCACG CGGGGTTCCA CCTAACAACT GCGATCGTCG GACCAACAAT TCTGACTCTG CCTTACGCGT
TCCGAGGATT AGGGTGGGGA CTTGGATTCT TGTGCCTAAC GACCATGGGA GTTGTTACCT TCTACTCCTA TTTCCTCATG
TCCAAAGTTC TCGATTACTG TGAAAAATCC GGTCGCCGAC ACATCCGTTT CCGAGAACTA GCAGCTGATG TTTTAGGGTC
AGGATGGATG TTTTATTTTG TAATCTTCAT TCAAACGGCA ATCAACACTG GCGTTGGCGT TGGAGCAATC TTGCTTGCGG
GTGAATGCCT TGAGATCATG TACTCCAATA TTTCAGTTCA TGGATCCCTC AAATTGTACC ACTTTATAGC AATGGTGACA
GTGGTAATGA TAGTTTTATC TCAGCTTCCT TCTTTCCATT CCCTGCGACA CATCAACTTG TGTTCACTAC TTTTCGCCCT
TGGCTATACC CTACTCGTGG TTGTTGCCTG TATTCATGCA GGTACTTCAG AAAATGCCCC TCCAAGAGAC TATTCTTTAG
AACCTAAGAA GTCTGCAAGG ACCTTCAGTG CCTTCACGTC CCTCTCCATA CTTGCAGCAA TATTTGGGAA TGGCATATTA
CCCGAGATAC AAGCAACTCT GGCTCCCCCT GCCACTGGGA AGATGGTAAA AGGCCTTATT ATGTGTTATA CAGCAATTTT
TTTTACTTTC TACTCTGCAG CAGTTTCTGG ATATTGGGTG TTTGGAAACA AATCCAACTC AAACATTTTA AAGAGTCTGC
TACCAGATAG TGGACCTTCT TTGGCCCCAA CTTGGGTTCT TGCACTTGCA ATCACCTTTG TTCTTCTTCA GCTCTTTGCC
ATTGGCCTGG TTTATTCTCA AGTTGCTTAT GAGATAATGG AGAAGAAATC AGCTGATGTG AGGCAGGGGA TGTTTTCCAA
AAGAAATCTC ATTCCTCGCA TTATTCTCAG AACAATTTAC ACGATATGCT GTGGGTTTTT GGCAGCCATG TTGCCATTTT
TTGGAGACAT CAACGGTGTG GTTGGTGCTG TTGGTTTCAT CCCTTTGGAT TTCATTCTGC CGATGCTTAT GTACAACATG
ACATACAAGC CTCCAAAATC ATCCTTAACT TACTGGATCA ACCTCTCAAT TATAGTGGTG TTCACGGGTG CTGGAATCAT
GGGTGCATTC TCTTCCATAA GGAAATTGGT TCTTGATGCC AACCAGTTTA AGCTATTCAG CAGTGATGTT GTGGATTGA

>Vigan.01G044800.01
MTEPPKADIH NRHDEDADAG AAFVLQSKGQ WWHAGFHLTT AIVGPTILTL PYAFRGLGWG LGFLCLTTMG VVTFYSYFLM
SKVLDYCEKS GRRHIRFREL AADVLGSGWM FYFVIFIQTA INTGVGVGAI LLAGECLEIM YSNISVHGSL KLYHFIAMVT
VVMIVLSQLP SFHSLRHINL CSLLFALGYT LLVVVACIHA GTSENAPPRD YSLEPKKSAR TFSAFTSLSI LAAIFGNGIL
PEIQATLAPP ATGKMVKGLI MCYTAIFFTF YSAAVSGYWV FGNKSNSNIL KSLLPDSGPS LAPTWVLALA ITFVLLQLFA
IGLVYSQVAY EIMEKKSADV RQGMFSKRNL IPRIILRTIY TICCGFLAAM LPFFGDINGV VGAVGFIPLD FILPMLMYNM
TYKPPKSSLT YWINLSIIVV FTGAGIMGAF SSIRKLVLDA NQFKLFSSDV VD*