GBrowse Details

Vigan.01G047700.01

Basic Information:
Name: Vigan.01G047700.01
Multiple alignment
Variant Information
Position: Chr01:3464219..3474193 (+ strand)
Length: 9975
Functional Information:
Description: Similar to CAAX amino terminal protease family protein isoform 1. [XP_007040382.1, Theobroma cacao]
GO: Cellular Component: membrane (GO:0016020)
InterPro: CAAX amino terminal protease (IPR003675)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.39,17.70,11.27,24.69,9.56,13.65,10.06,13.44
Arabidopsis thaliana homolog: AT5G60750.1
Automatic updates:
Name: NM_001349883 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative protease (LOC100816897), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3464219..3464635 (+ strand)
Length: 417
Type: five_prime_UTR
Position: Chr01:3464636..3464761 (+ strand)
Length: 126
Type: CDS
Position: Chr01:3465072..3465227 (+ strand)
Length: 156
Type: CDS
Position: Chr01:3472882..3472953 (+ strand)
Length: 72
Type: CDS
Position: Chr01:3473154..3473822 (+ strand)
Length: 669
Type: CDS
Position: Chr01:3473823..3474193 (+ strand)
Length: 371
Type: three_prime_UTR


>Vigan.01G047700.01
ATGGGAACAC CATTTACCCA ACACATTAAG ATTCAATAGT ATCTATCTGT GAGCATTAAT ATTCCCAATT TCCGATTGGC
TATAGTTGCT AGATGCTACA TCAAATCTGG TGAGAAAGTT TCTTCCTTTT TTCAAAAACC CTTATAAATT TAGGGTCAGA
ATTGAACACC ACGAGCAGAA CGGGATATAC CATTTCAATG AGTCTGGATA GGAAACAAGC TTGACCTTGG TCGCTGTCTT
TTGTTCTTCT TGGATGGAAC AAACTAAAAG TGGGAAGAAA AGTTTCAAAT CACATTCTCC TAGCTACCTT CTTATCCTAA
CCATAACAAC CAATCCCCAA ATATTAAACC CTTTTTGTTG ATGTAAGGGA CTAATTAGCA GGGTGGTGTT TGGGTTATTA
GCCCTTAGGG TTTATAAATG TTGAGTACCT CTTCTTATTC TGCCTTTAGC CGCTCCTTTC TTCCGATCAA GGGTTTTCCC
CGACCCGTCG CACTACGTCC TTTTCCTCGG ATCTTGGAAT CCCATGCCAA GTCTCCAAGA AATAGATTGA GTATTCAGTG
CTTTAGGCAC GATCATCTTT CTCCAGAAAC ACCCCAACCT GAAGTTATAG AGCACTATTT TCATGAGGAA CTGGTGCAAT
CTGAATTCAG TGACTCCAGT GTTGTCACCA AAAGAGACTG GAAATCATCC CTTCAGAAGG CTGCAAATGA AGTATTCAAG
GTAATTGGTT ATCCATGGGT TGTGCCATGG ACTGCAATAA CTATATTACA AGTTATGCTT CTTTGGACGA CAGCATTTTG
GTTTATAGGA TCTTGGATGA TTCCTTTTGC TGCCCACATA ACTGGCTTTA GCAAGGAGTC TTTAACATTT AGAGGGCAAG
CACTGTTCAG TCTCGTTACC GATGTAACTG AAGGACTTGC TGGAGTTGCA ATTCTTCTTC ACTGTCTTTC TCGATTTCGC
CCTCTTCCAC CGGACTGGTT CAGGTTTAGC CTGAAAGGCA ATTGGCAATT AGATGTCATC ATGGGATGTC TCATGTTTCC
ACTTGTCAAT CGGCTGTCAC AGTTCAACCT GGACCTACTA CCCCTTTTAC CCTCTACACC TGTCACCCTT TCTAGTGTTG
AACAATCAAT AAGGGCAAGG GATCCAGTGG CAATGCTATT GTATGCAACA GTTGTATCAG TCTGTGCTCC TGTATGGGAA
GAGATAGTTT TCCGTGGCTT TCTACTCCCA TCCCTCACCA AATACATGCC AGTGTGGTGT GCAATACTGG TAAGTTCAAT
TGCCTTTGCG CTTGCACACT TCAACATACA GAGGATGCTG CCCCTTATAT TTCTTGGCAT GGTAATGGGT GTGATATATA
CACGGTCAAG GAATTTACTG CCACCAATGC TGTTGCATAG TCTTTGGAAT GGTTTTGTCT TCTTAGATTT GATGAAATAG
CTTCTTCCAA GTTGTGATTC TCTGTCAGGG AGTCTATGGT GTAGGTAGAA TTGCAAGCAC TAGGATGCGG GCTGCTTTGG
ATCAGCATCT TCACAAGTAA ACGCTGACCA AGTGCATGTG CTAAGAGTAA CAGCAGTTAA TGTGCTCTTA CAGTTGTACA
TTGTAAAAAA ACAGAACCCC CCATTTGTCC ATATCTGTGC TGATATTTGA CAGGTATAAT TAAAACAATC TATTGAGTAA
CCCCTCTCCC TTTTCTGTGA AATTAATTCA TTTTTGCTCA CATGATGCTG AAGGACGGTT CTATTTTATA TTCTGAAGAA
GCTCATCCTT TAGAATTTCA TCTAATGATA ATGAAAAAGT ACACTACACA A

>Vigan.01G047700.01
ATGTTGAGTA CCTCTTCTTA TTCTGCCTTT AGCCGCTCCT TTCTTCCGAT CAAGGGTTTT CCCCGACCCG TCGCACTACG
TCCTTTTCCT CGGATCTTGG AATCCCATGC CAAGTCTCCA AGAAATAGAT TGAGTATTCA GTGCTTTAGG CACGATCATC
TTTCTCCAGA AACACCCCAA CCTGAAGTTA TAGAGCACTA TTTTCATGAG GAACTGGTGC AATCTGAATT CAGTGACTCC
AGTGTTGTCA CCAAAAGAGA CTGGAAATCA TCCCTTCAGA AGGCTGCAAA TGAAGTATTC AAGGTAATTG GTTATCCATG
GGTTGTGCCA TGGACTGCAA TAACTATATT ACAAGTTATG CTTCTTTGGA CGACAGCATT TTGGTTTATA GGATCTTGGA
TGATTCCTTT TGCTGCCCAC ATAACTGGCT TTAGCAAGGA GTCTTTAACA TTTAGAGGGC AAGCACTGTT CAGTCTCGTT
ACCGATGTAA CTGAAGGACT TGCTGGAGTT GCAATTCTTC TTCACTGTCT TTCTCGATTT CGCCCTCTTC CACCGGACTG
GTTCAGGTTT AGCCTGAAAG GCAATTGGCA ATTAGATGTC ATCATGGGAT GTCTCATGTT TCCACTTGTC AATCGGCTGT
CACAGTTCAA CCTGGACCTA CTACCCCTTT TACCCTCTAC ACCTGTCACC CTTTCTAGTG TTGAACAATC AATAAGGGCA
AGGGATCCAG TGGCAATGCT ATTGTATGCA ACAGTTGTAT CAGTCTGTGC TCCTGTATGG GAAGAGATAG TTTTCCGTGG
CTTTCTACTC CCATCCCTCA CCAAATACAT GCCAGTGTGG TGTGCAATAC TGGTAAGTTC AATTGCCTTT GCGCTTGCAC
ACTTCAACAT ACAGAGGATG CTGCCCCTTA TATTTCTTGG CATGGTAATG GGTGTGATAT ATACACGGTC AAGGAATTTA
CTGCCACCAA TGCTGTTGCA TAGTCTTTGG AATGGTTTTG TCTTCTTAGA TTTGATGAAA TAG

>Vigan.01G047700.01
MLSTSSYSAF SRSFLPIKGF PRPVALRPFP RILESHAKSP RNRLSIQCFR HDHLSPETPQ PEVIEHYFHE ELVQSEFSDS
SVVTKRDWKS SLQKAANEVF KVIGYPWVVP WTAITILQVM LLWTTAFWFI GSWMIPFAAH ITGFSKESLT FRGQALFSLV
TDVTEGLAGV AILLHCLSRF RPLPPDWFRF SLKGNWQLDV IMGCLMFPLV NRLSQFNLDL LPLLPSTPVT LSSVEQSIRA
RDPVAMLLYA TVVSVCAPVW EEIVFRGFLL PSLTKYMPVW CAILVSSIAF ALAHFNIQRM LPLIFLGMVM GVIYTRSRNL
LPPMLLHSLW NGFVFLDLMK *