GBrowse Details

Vigan.01G048600.01

Basic Information:
Name: Vigan.01G048600.01
Multiple alignment
Variant Information
Position: Chr01:3569307..3573540 (+ strand)
Length: 4234
Functional Information:
Description: Similar to Serine/threonine-protein phosphatase. [V7CS56, Phaseolus vulgaris]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.27,13.24,14.64,14.87,24.79,12.83,18.36,12.97
Arabidopsis thaliana homolog: AT1G64040.1, AT2G29400.1, AT2G39840.1, AT4G11240.1, AT5G59160.1
Automatic updates:
Name: NM_001255253 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100783178), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3569307..3569734 (+ strand)
Length: 428
Type: five_prime_UTR
Position: Chr01:3569735..3569912 (+ strand)
Length: 178
Type: CDS
Position: Chr01:3571140..3571699 (+ strand)
Length: 560
Type: CDS
Position: Chr01:3572218..3572475 (+ strand)
Length: 258
Type: CDS
Position: Chr01:3572476..3573540 (+ strand)
Length: 1065
Type: three_prime_UTR


>Vigan.01G048600.01
CTAATATTAT TATTATTTTT TTTTGGCAAT TTGCCTATAG AAAAAAATGA GAAGGAAGAT GAATGTGTAT TATTATTTGT
CCTTGTCACA AGTAGAACTA GGGTAGGGTT GGTACTAGTG GCCACTCCCC TCCGCCAAAC CCAAAGAGTA CAAAACCTAC
ATAACTATTA GCGTCGTCGA TGTCTCTCTA AACAACTCCG TTTGTCATTT CCGTTCTGGA AGCGGGAAAC GGCGCCATTT
CCAATCAGCC CCTCGTCGTT TCGCTCCTTT CCCCTTTTTC GTTTTTGATT CGTTCGTTAA ACCCTTTGCT TTGCCTTCTC
TCTATCTCTT ATTTTTTCTT CGGCTTTATC TTTAAGCCAA AGCGTGAACC CTTTTCTTCT CCTTCTCAAA CCCATAACCC
GATCATCCGC TTTTGAAATT ATCGCGAGAT GGATGAGAAT TTGCTCGACG ATATTATCCG CCGGCTCGTT GCGGCAAAGA
ACGGTAGAGC AACGAAGCAG GTGCAGCTTA CGGAGGCGGA AATTCGACAA CTCTGCGCTT CCTCTAAAGA GATCTTTCTC
AGTCAACCCA ATCTTCTCGA ACTCGAGGCT CCAATTAAGA TTTGTGGAGA TGTTCATGGC CAATACTCAG ACCTTTTAAG
GCTGTTTGAA TACGGGGGAT ACCCTCCAGA AGCAAATTAT TTATTTCTTG GAGATTATGT TGATCGTGGT AAGCAAAGCA
TAGAGACAAT ATGCTTACTC CTTGCATACA AGGTCAAATT CAAGGAGAAT TTCTTTCTTC TCAGGGGTAA CCATGAGTGT
GCCTCCATCA ACCGAATATA TGGTTTCTAT GATGAGTGTA AGAGGAGATT TAATGTTCGC ATCTGGAAGA CATTTACTGA
ATGCTTTAAT TGTCTACCTG TTGCTGCTCT GATAGATGAG AAGATTCTTT GCATGCATGG TGGACTATCA CCTGATCTTA
AACATTTGGA TCAGATACGG AATCTTGCTC GTCCTATCGA TGTGCCAGAT CACGGTCTTC TCTGTGATCT TCTATGGGCT
GATCCTGATA AAGATCTTGA TGGGTGGGGA GAAAATGATC GAGGTGTGTC ATTTACATTT GGGGCTGACA AGGTTGTTGA
ATTTCTTGAA CAGCATGATC TTGACCTAAT TTGCAGAGCT CATCAGGTTG TAGAGGATGG ATATGAGTTT TTTGCCAAGC
GTCAGTTGGT GACTATATTC TCCGCCCCCA ATTACTGTGG TGAATTTGAT AATGCTGGTG CTATGATGAG TGTGGATGAC
ACTTTGACAT GCTCTTTTCA AATACTTAAA TCTTCTGAAA AGAAAGTGAA AGGTGGATTT GGCAACAACA CATCAAGACC
GGGAACTCCA CCTCATAAGG TAATAAAGAT TGAAATTACT TTAAGACATG CACTTGTTCA TTAATATTTA CTATTTATGC
TTATGTATGT GGATAGCTGT TTGTATGTTC TAATGTAAGT ATGTCCCAAA CTCGAGTTTT AATCAAGAAG GTGACTGTAT
CATAACTTCT AGGTCTATCT ATTAACAACT ATGATCCATG TGTATTACTT AAGTTGGTTA TTGTACATAT GAATCAATTA
GTGTGGATTT AACCTGTCCA AAAGATCCAA GTCTCGCAGC CTTACCACTG CTCACAATTA TCTTAGACTT TTATACCAAT
TTTCTGGCTA GGTTACGTTC TATTTGGGGG CATGAGCGTC AAGTGAAACA GTGACCTCTA GTGCAGAGCC CGTGTTATGT
CGTGAGGGGG GGCAATTCCT CTTAACGAGG TTTATACCTC CTTCACGTGT TCAAGGAGTG TGATGTTTGT AGATATTAAA
ATTCGTTTAG TTGTCCACCA ATGATTTTCC CTTCTTTTTA CCTTTTTGCA AGCCCATCAG TGTGAGACAG GATGAATAAA
AGGCGAAAAG AGTAGTATGG ATTTTGTTAA ATTACTTGAG CATCTATTAA TTGTGGCTTG AAAATTTTGG CGAAGTTTGC
TAGCTGCCTT CTTTTCATTC TATCATATGC TACGTATGTT TTTTAAAATA TACTACCGAG TTCTAATCTA TCCTACCCTT
TTGCATCCAG GGTGGGAAGA ATTAACATTT CGACCCATAC AAAGGTCGAT GAGCTCAATA GAGGCTTTCA TTCTTCGTTT
AGTTCAAAGG CTTATCGTTC TGTTGCCTGG CATGATTCAC AGCATATATA TAAAGCATAG CGTCTTCTTT CCTTGGTAAC
GAAACTAAGC TGTGTAGCAA GGAACAGGGC ACTTCATTGT GCAACTGATT GACCCCCTTT CCTTTGTTTC TTTCTTTCTT
CCTTCACATA GTTTTTTTAA TGTACAATGC AAATTCAAAC ATTGTAAGGA GAAATCTGGA TATCTTATTT CGTCGCGGGA
AGTTTAATTT AGGTTAAATT CACTTCTCCT TGCTTAAAAA GTTACATTTT ATATTTTAGT CATTACTAAT GAAATTTACA
CTTTAGCTC

>Vigan.01G048600.01
ATGGATGAGA ATTTGCTCGA CGATATTATC CGCCGGCTCG TTGCGGCAAA GAACGGTAGA GCAACGAAGC AGGTGCAGCT
TACGGAGGCG GAAATTCGAC AACTCTGCGC TTCCTCTAAA GAGATCTTTC TCAGTCAACC CAATCTTCTC GAACTCGAGG
CTCCAATTAA GATTTGTGGA GATGTTCATG GCCAATACTC AGACCTTTTA AGGCTGTTTG AATACGGGGG ATACCCTCCA
GAAGCAAATT ATTTATTTCT TGGAGATTAT GTTGATCGTG GTAAGCAAAG CATAGAGACA ATATGCTTAC TCCTTGCATA
CAAGGTCAAA TTCAAGGAGA ATTTCTTTCT TCTCAGGGGT AACCATGAGT GTGCCTCCAT CAACCGAATA TATGGTTTCT
ATGATGAGTG TAAGAGGAGA TTTAATGTTC GCATCTGGAA GACATTTACT GAATGCTTTA ATTGTCTACC TGTTGCTGCT
CTGATAGATG AGAAGATTCT TTGCATGCAT GGTGGACTAT CACCTGATCT TAAACATTTG GATCAGATAC GGAATCTTGC
TCGTCCTATC GATGTGCCAG ATCACGGTCT TCTCTGTGAT CTTCTATGGG CTGATCCTGA TAAAGATCTT GATGGGTGGG
GAGAAAATGA TCGAGGTGTG TCATTTACAT TTGGGGCTGA CAAGGTTGTT GAATTTCTTG AACAGCATGA TCTTGACCTA
ATTTGCAGAG CTCATCAGGT TGTAGAGGAT GGATATGAGT TTTTTGCCAA GCGTCAGTTG GTGACTATAT TCTCCGCCCC
CAATTACTGT GGTGAATTTG ATAATGCTGG TGCTATGATG AGTGTGGATG ACACTTTGAC ATGCTCTTTT CAAATACTTA
AATCTTCTGA AAAGAAAGTG AAAGGTGGAT TTGGCAACAA CACATCAAGA CCGGGAACTC CACCTCATAA GGTAATAAAG
ATTGAAATTA CTTTAAGACA TGCACTTGTT CATTAA

>Vigan.01G048600.01
MDENLLDDII RRLVAAKNGR ATKQVQLTEA EIRQLCASSK EIFLSQPNLL ELEAPIKICG DVHGQYSDLL RLFEYGGYPP
EANYLFLGDY VDRGKQSIET ICLLLAYKVK FKENFFLLRG NHECASINRI YGFYDECKRR FNVRIWKTFT ECFNCLPVAA
LIDEKILCMH GGLSPDLKHL DQIRNLARPI DVPDHGLLCD LLWADPDKDL DGWGENDRGV SFTFGADKVV EFLEQHDLDL
ICRAHQVVED GYEFFAKRQL VTIFSAPNYC GEFDNAGAMM SVDDTLTCSF QILKSSEKKV KGGFGNNTSR PGTPPHKVIK
IEITLRHALV H*