GBrowse Details

Vigan.01G050600.01

Basic Information:
Name: Vigan.01G050600.01
Multiple alignment
Variant Information
Position: Chr01:3783267..3787131 (- strand)
Length: 3865
Functional Information:
Description: Similar to Hydroxyproline-rich glycoprotein family protein. [V5NAU3, Phaseolus vulgaris]
InterPro: Uncharacterised protein family Cys-rich (IPR006461)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.88,6.74,54.14,39.09,84.84,73.29,55.50,53.32
Arabidopsis thaliana homolog: AT1G63830.2, AT4G23470.1
Automatic updates:
Name: NM_001250406 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306088 (LOC100306088), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3783267..3783524 (- strand)
Length: 258
Type: three_prime_UTR
Position: Chr01:3783525..3783797 (- strand)
Length: 273
Type: CDS
Position: Chr01:3783881..3783899 (- strand)
Length: 19
Type: CDS
Position: Chr01:3783993..3784117 (- strand)
Length: 125
Type: CDS
Position: Chr01:3784225..3784320 (- strand)
Length: 96
Type: CDS
Position: Chr01:3785479..3785560 (- strand)
Length: 82
Type: CDS
Position: Chr01:3785660..3785716 (- strand)
Length: 57
Type: CDS
Position: Chr01:3786634..3786655 (- strand)
Length: 22
Type: CDS
Position: Chr01:3786750..3786849 (- strand)
Length: 100
Type: CDS
Position: Chr01:3786850..3787131 (- strand)
Length: 282
Type: five_prime_UTR


>Vigan.01G050600.01
TGTAGTTACA GTCTTAGTTG GCTTACGCGG GGTCACTACA GCTATGATGG GGGAATGAAG CAAAGAGTCC ATAGACCAAT
AGAAGTTTAG TGAGCTGTTT CAAGCTTCAA CGCCCCAGAA CTACGCCTAT AATCTTTTCT TATCCCTCTT ACTTTTATCT
CTTTCATTTC CTTCTCAAAC GCTACGAGAT TTCGTCATCC CTGTTATATC TCGTGACGCA TTTCCCCAAG TATCTGATCT
AGGGTTTTTC ACACTGTGCT CGAGAAGAAG AAAACAATCG TCATGGCGTC GCAGGAGCAC ATCGAGAAGA TGCAGGCACG
CCAGAATTTC CGGAATCTAT GGCACACCGA TCTCATGCGT ACCATTCAGG CCGATACTCC TTATTGTTGC TTCGCGCTGT
GGTGTGCACC GTGTGTGTCT TATCTTCTTC GCAAACGAGC TCTTTATGAT GACATGTCAA GATACACATG TTGTGCTGGT
TACATGCCCT GCAGTGGTAG GTGTGGAGAA AGTAAATGTC CTGAATTTTG CCTTTGCACT GAGGTTTTCC TCTGCTTTGG
AAACTCAGTT GCCTCAACTC GCTTTCTTTT GCAAGATGAA TTTAACATTC AAACAACGCA ATGTGATAAT TGCATTATTG
GTTTCATGTT TTGCCTTCAA CAAATTGCAT GTATATTCTC TATTGTTGCG ATGATTGTTG GAAGCGAGGA AATTCAAGAG
GCTTCTCAGT TGCTATCTTG TTTGGCTGAC TTTGTGTACT GCACGGTCTG TGCATGCATG CAGACTCAGC ACAAGATTGA
AATGGACAAG CGTGATGGGA AATTTGGACC CCAACCAGTA ATGTCAGTGC CCCCTGTTCA GCAGATGTCA CGCATTGATC
AGCAAGTTCC TCCTTCTGTT GGGTATGCAC CACAACCAGC TTATGGACAG CCCTATGGTT ATCCACCTGC CCCACCACCT
TCTCAAGGAT ACCCAGCTCC TGGATACCCC CCGACTGGTT ATCCCCCAGC TGCCTATCCT CCACCAGGGT ACCCCCCATC
TGGCTACCCT AAGTGATTAC TTTACCTGCC ATTGTATTCT CTACACCGCT AATTGATTGG TTCATAAAAC AATCGCACAT
GTTTCTGGTG AAATGCAATA GTTCCATCTC ATCTGTTAAT TATTCTGCAT TTCCCATTAC AAGTTTTTTT GTGACTTGAC
ACATTATAAT TCCTGTCGTA CTTCTATTTT GTATATTCTT CTCGTTGGTG TTCATAAATA GTTAACTTTC ACTTGTTATG
TGCAATATAC CGGTATAATA TGCACTTTTC CAAA

>Vigan.01G050600.01
ATGGCGTCGC AGGAGCACAT CGAGAAGATG CAGGCACGCC AGAATTTCCG GAATCTATGG CACACCGATC TCATGCGTAC
CATTCAGGCC GATACTCCTT ATTGTTGCTT CGCGCTGTGG TGTGCACCGT GTGTGTCTTA TCTTCTTCGC AAACGAGCTC
TTTATGATGA CATGTCAAGA TACACATGTT GTGCTGGTTA CATGCCCTGC AGTGGTAGGT GTGGAGAAAG TAAATGTCCT
GAATTTTGCC TTTGCACTGA GGTTTTCCTC TGCTTTGGAA ACTCAGTTGC CTCAACTCGC TTTCTTTTGC AAGATGAATT
TAACATTCAA ACAACGCAAT GTGATAATTG CATTATTGGT TTCATGTTTT GCCTTCAACA AATTGCATGT ATATTCTCTA
TTGTTGCGAT GATTGTTGGA AGCGAGGAAA TTCAAGAGGC TTCTCAGTTG CTATCTTGTT TGGCTGACTT TGTGTACTGC
ACGGTCTGTG CATGCATGCA GACTCAGCAC AAGATTGAAA TGGACAAGCG TGATGGGAAA TTTGGACCCC AACCAGTAAT
GTCAGTGCCC CCTGTTCAGC AGATGTCACG CATTGATCAG CAAGTTCCTC CTTCTGTTGG GTATGCACCA CAACCAGCTT
ATGGACAGCC CTATGGTTAT CCACCTGCCC CACCACCTTC TCAAGGATAC CCAGCTCCTG GATACCCCCC GACTGGTTAT
CCCCCAGCTG CCTATCCTCC ACCAGGGTAC CCCCCATCTG GCTACCCTAA GTGA

>Vigan.01G050600.01
MASQEHIEKM QARQNFRNLW HTDLMRTIQA DTPYCCFALW CAPCVSYLLR KRALYDDMSR YTCCAGYMPC SGRCGESKCP
EFCLCTEVFL CFGNSVASTR FLLQDEFNIQ TTQCDNCIIG FMFCLQQIAC IFSIVAMIVG SEEIQEASQL LSCLADFVYC
TVCACMQTQH KIEMDKRDGK FGPQPVMSVP PVQQMSRIDQ QVPPSVGYAP QPAYGQPYGY PPAPPPSQGY PAPGYPPTGY
PPAAYPPPGY PPSGYPK*