GBrowse Details

Vigan.01G051200.01

Basic Information:
Name: Vigan.01G051200.01
Multiple alignment
Variant Information
Position: Chr01:3855133..3858008 (+ strand)
Length: 2876
Functional Information:
Description: Similar to Uncharacterized protein. [I1K6H0, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.46,12.39,17.35,8.36,36.18,29.53,29.31,18.72
Arabidopsis thaliana homolog: AT1G63800.1
Automatic updates:
Name: NM_001249999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527756 (LOC100527756), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3855133..3855302 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr01:3855303..3855346 (+ strand)
Length: 44
Type: CDS
Position: Chr01:3855470..3855549 (+ strand)
Length: 80
Type: CDS
Position: Chr01:3855891..3856005 (+ strand)
Length: 115
Type: CDS
Position: Chr01:3856159..3856211 (+ strand)
Length: 53
Type: CDS
Position: Chr01:3856325..3856453 (+ strand)
Length: 129
Type: CDS
Position: Chr01:3857679..3857812 (+ strand)
Length: 134
Type: CDS
Position: Chr01:3857813..3858008 (+ strand)
Length: 196
Type: three_prime_UTR


>Vigan.01G051200.01
CAAACTTTCA GTTTTTTTTT GTTTGTTTGT TTGGGTTTGA GCCTTTTTTT ATTTGTGGAA CATGAAGTAA ACAGTTTCAG
CCTTTCTTCT TGTATGTGTA CCTTTGATTC CACAGAGCTT CGCAGCAGCA GAATCGCACA AACAACAAGA GTCAAACGCA
GAGAGAAACA ATGTCTTCTC CTAGCAAACG CAGGGACATG GACCTGATGA AACTGATGAT GAGGGACTAC AAGGTGGAGA
TGATCAACGA TGGCATGCAA GAATTCTTTG TGGAATTCCA CGGACCTAAA GATAGTCTGT ATGAGGTTGG TGTGTGGAAG
GTAAGGGTGG AGCTACCTGA TGCTTATCCT TATAAGTCTC CATCTATTGG CTTTGTCAAT AAAATTTTTC ATCCTAATGT
TGATGAATTG TCTGGTTCTG TATGCTTAGA TGTTATTAAC CAGACTTGGA GTCCCATGTT TGACCTTGTT AATGTGTTTG
AGGTGTTTCT TCCTCAACTT CTTCTGTATC CCAATGCATC AGATCCATTA AATGGTGATG CTGCTGCCTT GATGATCCGA
GATCATGCTA CATATGAACA AAGAGTCAAA GAATATTGTG AGAAATATGC GAAGCCAGAA GACATTGGAG CTGCAGAGGA
GAAAGATTCT AGCGAGGATG AGCTGAGTGA AGATGGTTAT GCCTCTAGTG ATGATGATGG CATTGTCGGG CAACCAGATC
CTTAGATTTT TACATATAAT GCCTGTCTTA TTTGATTGTA CATGATATCA TATGATTTTA TATCGAGTCC AAGAATAGGT
TAAAGAGACA AAGTTCTTAT GGTTGAAGGA AAACTACACA CCTTTCTATC TGTTCCATGG TGGTTGTGTG TAAATTGGTT
TATGATTTAG GTGTTTAAGG TATTCAGTTA TGTGACTAGA A

>Vigan.01G051200.01
ATGTCTTCTC CTAGCAAACG CAGGGACATG GACCTGATGA AACTGATGAT GAGGGACTAC AAGGTGGAGA TGATCAACGA
TGGCATGCAA GAATTCTTTG TGGAATTCCA CGGACCTAAA GATAGTCTGT ATGAGGTTGG TGTGTGGAAG GTAAGGGTGG
AGCTACCTGA TGCTTATCCT TATAAGTCTC CATCTATTGG CTTTGTCAAT AAAATTTTTC ATCCTAATGT TGATGAATTG
TCTGGTTCTG TATGCTTAGA TGTTATTAAC CAGACTTGGA GTCCCATGTT TGACCTTGTT AATGTGTTTG AGGTGTTTCT
TCCTCAACTT CTTCTGTATC CCAATGCATC AGATCCATTA AATGGTGATG CTGCTGCCTT GATGATCCGA GATCATGCTA
CATATGAACA AAGAGTCAAA GAATATTGTG AGAAATATGC GAAGCCAGAA GACATTGGAG CTGCAGAGGA GAAAGATTCT
AGCGAGGATG AGCTGAGTGA AGATGGTTAT GCCTCTAGTG ATGATGATGG CATTGTCGGG CAACCAGATC CTTAG

>Vigan.01G051200.01
MSSPSKRRDM DLMKLMMRDY KVEMINDGMQ EFFVEFHGPK DSLYEVGVWK VRVELPDAYP YKSPSIGFVN KIFHPNVDEL
SGSVCLDVIN QTWSPMFDLV NVFEVFLPQL LLYPNASDPL NGDAAALMIR DHATYEQRVK EYCEKYAKPE DIGAAEEKDS
SEDELSEDGY ASSDDDGIVG QPDP*