GBrowse Details

Vigan.01G053400.01

Basic Information:
Name: Vigan.01G053400.01
Multiple alignment
Variant Information
Position: Chr01:4063453..4071053 (+ strand)
Length: 7601
Functional Information:
Description: Similar to Chloroplast gamma glutamyl cysteine synthetase. [H6TJW3, Vigna radiata]
GO: Biological Process: glutathione biosynthetic process (GO:0006750)
Biological Process: cellular modified amino acid biosynthetic process (GO:0042398)
Molecular Function: glutamate-cysteine ligase activity (GO:0004357)
InterPro: Glutamate--cysteine ligase, GCS2 (IPR006336)
Glutamate--cysteine ligase, plant (IPR011556)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:134.55,125.09,27.48,31.67,22.76,19.27,16.45,19.39
Arabidopsis thaliana homolog: AT4G23100.1
Automatic updates:
Name: NM_001317274 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata glutamate--cysteine ligase, chloroplastic-like (LOC106767912), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:4063453..4063738 (+ strand)
Length: 286
Type: five_prime_UTR
Position: Chr01:4063739..4064022 (+ strand)
Length: 284
Type: CDS
Position: Chr01:4064931..4065081 (+ strand)
Length: 151
Type: CDS
Position: Chr01:4065212..4065319 (+ strand)
Length: 108
Type: CDS
Position: Chr01:4065566..4065658 (+ strand)
Length: 93
Type: CDS
Position: Chr01:4066696..4066779 (+ strand)
Length: 84
Type: CDS
Position: Chr01:4066914..4066982 (+ strand)
Length: 69
Type: CDS
Position: Chr01:4067060..4067130 (+ strand)
Length: 71
Type: CDS
Position: Chr01:4067216..4067284 (+ strand)
Length: 69
Type: CDS
Position: Chr01:4068395..4068488 (+ strand)
Length: 94
Type: CDS
Position: Chr01:4068631..4068720 (+ strand)
Length: 90
Type: CDS
Position: Chr01:4068815..4068895 (+ strand)
Length: 81
Type: CDS
Position: Chr01:4069680..4069772 (+ strand)
Length: 93
Type: CDS
Position: Chr01:4070345..4070425 (+ strand)
Length: 81
Type: CDS
Position: Chr01:4070503..4070572 (+ strand)
Length: 70
Type: CDS
Position: Chr01:4070812..4070900 (+ strand)
Length: 89
Type: CDS
Position: Chr01:4070901..4071053 (+ strand)
Length: 153
Type: three_prime_UTR


>Vigan.01G053400.01
GTGCGTAATG CATATTAAGT AGTGGAGAGT GGTGGTGTGG TGGTAATATA TTGCTTCCAT TTTGATTCGA AGAGAGAAAT
AGAAGAGATA GCTACGAAGC TAAGCTTCTC CAAGCTGTGA CCCACCGACT GTACCAGAGA AACACCTTCC TCCACTCTCT
CTTCTCTTCT TCTTTCTTTC TTCCACTGCT AACAGTCAAT TCCTCAACCC TAATAACCGT TTTCCTCGCT CTTCTCTCTC
CCGATTTCTA ACATTCCTCC GCCTTTCGCT CCTTCCGGCC ACCGCCATGG CAGTCGTTTC GCGAACTACC ACCACCTACT
CCTACAGCCA CTTATCCCGA CGACACTTCG ATAGGGAAAC CAAAGCCTCT GCTGCCAACA CTTTGTCATG CTCTGCCTGG
GTTTCTGCTA AGAAGCCTTC TCCGACGCAG AGGATTGCCA CACGTGGGGG AAGAGTGATT GTTGCTGCTA GCCCTCCCAC
TGAAGATGCC GTGGTTGTCA CGGACCCACT CACCAAGCAG GATCTTGTGG ACTATCTTGC CTCGGGTTGC AAGCCCAGGG
AAAAATGGAG AATAGGTACT GAACACGAGA AGTTTGGTTT TGAGTTTGGA AGTTTGCGTC CTATGAAGTA TGAGCAAATA
GCAGAATTAT TGAATGGAAT CGCTGAGAGA TTTGACTGGG ATAAAATAAT GGAAGGTGAT AAAATTATTG GACTCAAACA
GGGAAAGCAG AGCATATCAT TGGAGCCCGG TGGTCAGTTT GAACTTAGTG GAGCCCCCCT TGAAACCTTG CACCAGACTT
GTGCTGAAGT TAATTCCCAC CTTTATCAGG TTAAAGCTGT AGCTGAGGAA ATGGGAATTG GATTTTTGGG AATTGGTTTC
CAGCCAAAGT GGGGAATCAA AGACATACCT GTAATGCCAA AGGGAAGATA TGATATTATG AGGAATTACA TGCCTAAAGT
TGGTTCTCTG GGGCTTGACA TGATGTTCAG GACATGCACT GTACAGGTCA ATCTGGACTT TAGTTCAGAA GCAGACATGA
TCAGGAAATT TCGTGCTGGC CTTGCTCTAC AGCCTATAGC AACGGCTCTT TTTGCGAATT CACCTTTTAA AGAGGGAAAG
CCAAATGGTT TTGTCAGCAT GAGAAGCCAT ATTTGGACCG ATACTGACAA GGACCGCACA GGCATGCTGC CTTTTGTCTT
TGATGATTCT TTTGGGTTTG AGCAGTATGT TGATTATGCT CTTGATGTTC CTATGTATTT TGTCTACCGG AAACACAGAT
ATATTGATTG TACTGGAAAG ACCTTCAGGG ACTTCTTGGA TGGAAGACTT CCTTGTATTC CTGGGGAATT ACCAACTCTC
AATGATTGGG AAAATCACTT GACAACTATA TTTCCTGAGG TCAGGCTGAA GAGGTATTTG GAGATGAGAG GTGCTGATGG
AGGCCCTTGG AGAAGGTTAT GTGCATTACC AGCACTTTGG GTAGGGTTAT TGTACGATGA TGCTTCTCTA CAAAGTGTTT
TAGATTTGAC AGCTGATTGG ACCCCAGAAG AAAGACTGAT GTTAAGGAAT AAGGTTCCCG TAACTGGTCT AAAAACACCA
TTCCGAGATG GTTTGCTGAA GCATGTTGCG GAAGATGTTC TACAGTTGGC AAAGGATGGC TTGGAGAGAA GAGGCTTCAA
GGAATCGGGA TTTTTGAATG AGGTAGCCGA GGTGGTTAGA ACAGGCGTCA CTCCAGCTGA GAGGCTTTTG GAATTGTATC
ATGGAAAGTG GGAGCAATCC GTAGATCATG TGTTTGAGGA ATTGCTTTAT TAAAGGTGCA TTATCTTCCA AATGTCAGTG
GAAGATTAAT TGTGTAATCT TTTGGTTATA GTCCTGGCTA TCTCATTTGA GCTCTCCATT TAGATATAGG AAATAATGTA
TTTGTAATTT TTGCCATGAG GCTTCTCATA TACCTTTCTT GGAAAC

>Vigan.01G053400.01
ATGGCAGTCG TTTCGCGAAC TACCACCACC TACTCCTACA GCCACTTATC CCGACGACAC TTCGATAGGG AAACCAAAGC
CTCTGCTGCC AACACTTTGT CATGCTCTGC CTGGGTTTCT GCTAAGAAGC CTTCTCCGAC GCAGAGGATT GCCACACGTG
GGGGAAGAGT GATTGTTGCT GCTAGCCCTC CCACTGAAGA TGCCGTGGTT GTCACGGACC CACTCACCAA GCAGGATCTT
GTGGACTATC TTGCCTCGGG TTGCAAGCCC AGGGAAAAAT GGAGAATAGG TACTGAACAC GAGAAGTTTG GTTTTGAGTT
TGGAAGTTTG CGTCCTATGA AGTATGAGCA AATAGCAGAA TTATTGAATG GAATCGCTGA GAGATTTGAC TGGGATAAAA
TAATGGAAGG TGATAAAATT ATTGGACTCA AACAGGGAAA GCAGAGCATA TCATTGGAGC CCGGTGGTCA GTTTGAACTT
AGTGGAGCCC CCCTTGAAAC CTTGCACCAG ACTTGTGCTG AAGTTAATTC CCACCTTTAT CAGGTTAAAG CTGTAGCTGA
GGAAATGGGA ATTGGATTTT TGGGAATTGG TTTCCAGCCA AAGTGGGGAA TCAAAGACAT ACCTGTAATG CCAAAGGGAA
GATATGATAT TATGAGGAAT TACATGCCTA AAGTTGGTTC TCTGGGGCTT GACATGATGT TCAGGACATG CACTGTACAG
GTCAATCTGG ACTTTAGTTC AGAAGCAGAC ATGATCAGGA AATTTCGTGC TGGCCTTGCT CTACAGCCTA TAGCAACGGC
TCTTTTTGCG AATTCACCTT TTAAAGAGGG AAAGCCAAAT GGTTTTGTCA GCATGAGAAG CCATATTTGG ACCGATACTG
ACAAGGACCG CACAGGCATG CTGCCTTTTG TCTTTGATGA TTCTTTTGGG TTTGAGCAGT ATGTTGATTA TGCTCTTGAT
GTTCCTATGT ATTTTGTCTA CCGGAAACAC AGATATATTG ATTGTACTGG AAAGACCTTC AGGGACTTCT TGGATGGAAG
ACTTCCTTGT ATTCCTGGGG AATTACCAAC TCTCAATGAT TGGGAAAATC ACTTGACAAC TATATTTCCT GAGGTCAGGC
TGAAGAGGTA TTTGGAGATG AGAGGTGCTG ATGGAGGCCC TTGGAGAAGG TTATGTGCAT TACCAGCACT TTGGGTAGGG
TTATTGTACG ATGATGCTTC TCTACAAAGT GTTTTAGATT TGACAGCTGA TTGGACCCCA GAAGAAAGAC TGATGTTAAG
GAATAAGGTT CCCGTAACTG GTCTAAAAAC ACCATTCCGA GATGGTTTGC TGAAGCATGT TGCGGAAGAT GTTCTACAGT
TGGCAAAGGA TGGCTTGGAG AGAAGAGGCT TCAAGGAATC GGGATTTTTG AATGAGGTAG CCGAGGTGGT TAGAACAGGC
GTCACTCCAG CTGAGAGGCT TTTGGAATTG TATCATGGAA AGTGGGAGCA ATCCGTAGAT CATGTGTTTG AGGAATTGCT
TTATTAA

>Vigan.01G053400.01
MAVVSRTTTT YSYSHLSRRH FDRETKASAA NTLSCSAWVS AKKPSPTQRI ATRGGRVIVA ASPPTEDAVV VTDPLTKQDL
VDYLASGCKP REKWRIGTEH EKFGFEFGSL RPMKYEQIAE LLNGIAERFD WDKIMEGDKI IGLKQGKQSI SLEPGGQFEL
SGAPLETLHQ TCAEVNSHLY QVKAVAEEMG IGFLGIGFQP KWGIKDIPVM PKGRYDIMRN YMPKVGSLGL DMMFRTCTVQ
VNLDFSSEAD MIRKFRAGLA LQPIATALFA NSPFKEGKPN GFVSMRSHIW TDTDKDRTGM LPFVFDDSFG FEQYVDYALD
VPMYFVYRKH RYIDCTGKTF RDFLDGRLPC IPGELPTLND WENHLTTIFP EVRLKRYLEM RGADGGPWRR LCALPALWVG
LLYDDASLQS VLDLTADWTP EERLMLRNKV PVTGLKTPFR DGLLKHVAED VLQLAKDGLE RRGFKESGFL NEVAEVVRTG
VTPAERLLEL YHGKWEQSVD HVFEELLY*