VIGGS:GBrowse

Vigan.01G053500.01

Basic Information:

Name:	Vigan.01G053500.01 Multiple alignment Variant Information
Position:	Chr01:4073025..4075806 (+ strand)
Length:	2782

Functional Information:

Description:	Similar to tubulin beta-1 chain-like. [XP_003525399.1, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: microtubule-based process (GO:0007017)
	Biological Process: protein polymerization (GO:0051258)
	Cellular Component: microtubule (GO:0005874)
	Cellular Component: protein complex (GO:0043234)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: structural constituent of cytoskeleton (GO:0005200)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Tubulin (IPR000217)
	Beta tubulin (IPR002453)
	Tubulin/FtsZ, GTPase domain (IPR003008)
	Tubulin/FtsZ, C-terminal (IPR008280)
	Tubulin, conserved site (IPR017975)
	Tubulin/FtsZ, 2-layer sandwich domain (IPR018316)
	Tubulin, C-terminal (IPR023123)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.31,1.21,70.05,75.94,23.05,226.37,39.88,96.03
Arabidopsis thaliana homolog:	AT1G20010.1, AT1G75780.1, AT2G29550.1, AT4G20890.1, AT5G12250.1, AT5G23860.1, AT5G44340.1, AT5G62690.1, AT5G62700.1

Automatic updates:

Name:	NM_001358288 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tubulin beta-1 (TUBB1), mRNA.
PubMed ID:	24277502 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:4073025..4073110 (+ strand)
Length:	86
Type:	five_prime_UTR

Position:	Chr01:4073111..4073753 (+ strand)
Length:	643
Type:	CDS

Position:	Chr01:4074204..4074473 (+ strand)
Length:	270
Type:	CDS

Position:	Chr01:4074746..4075422 (+ strand)
Length:	677
Type:	CDS

Position:	Chr01:4075423..4075806 (+ strand)
Length:	384
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G053500.01
GATGGGATAT CAAGTGGTAG GAAGGAGTGA TGATTCAGAT ATTTTGCTTA GCTAGCATGA GGCCATAATA GCACAACAAT
CATGCAATGC AAGTTCTTGT CCCTTTCCAC GTCCAGCTCA TTACACTACT TGGAGTAAGA CACAGCCCCT TCCCAACAAA
CCCACATGAA CCTATTAATT CAACTTCCAT TCATTTTTAT TTTCATGTTG ACACTAAGAA ATTCAAGTAC CATTTTTATA
AATCTTATCA TCCCCTTTTG CCTTGTCCCT ACAAAAGGAC CAGCCCCTCT TCCTCTTCCC TTCTCAACTT CTGCTGCATC
ACTACCCTCT TCAATATGAG AGAAATCCTC CATGTTCAAG CTGGCCAATG TGGCAACCAA ATCGGAGGCA AGTTTTGGGA
GGTGATGTGT GATGAACATG GCATAGATGC CACTGGAAAT TACATAGGGG ACTCTCATCT TCAACTTGAG AGGGTTAACG
TCTACTACAA TGAAGCAAGT GGAGGACGCT ATGTTCCTCG AGCCGTGCTT ATGGACCTTG AACCGGGCAC CATGGACAGC
TTGCGATCTG GTCCTTATGG GAAAATTTTC AGGCCTGATA ACTTTGTCTT TGGTCAAAAC GGAGCTGGAA ACAACTGGGC
CAAGGGGCAT TACACTGAGG GAGCAGAGCT TATTGATTCT GTTCTTGATG TTGTTCGTAA AGAAGCTGAG AACTGTGACT
GCTTGCAGGG GTTTCAAATT TGTCACTCAC TGGGAGGTGG AACTGGGTCT GGAATGGGTA CTTTACTGAT CTCAAAGATC
AGAGAAGAGT ATCCAGATAG GATGATGTTG ACATTCTCAG TGTTCCCTTC TCCTAAGGTC TCTGACACAG TGGTTGAACC
CTACAATGCC ACTCTCTCTG TTCACCAACT GGTTGAGAAT GCAGATGAAT GCATGGTCCT TGACAATGAA GCACTCTATG
ATATCTGTTT CCGAACACTA AAGCTCACAA ATCCAAGTTT TGGTGATCTG AACCATTTGA TCTCAACAAC AATGAGCGGA
GTAACGTGCT GCCTCCGCTT CCCCGGCCAA CTCAACTCCG ACCTCCGGAA GCTGGCCGTG AACCTCATCC CCTTCCCGCG
GCTCCACTTC TTCATGGTGG GTTTCGCGCC GCTAACCTCC CGCGGCTCCC AGCAGTACCG CTCCCTCACG ATCCCGGAGC
TGACCCAGCA GATGTGGGAC GCGCGCAACA TGATGTGCGC CGCCGACCCT CGGCACGGCC GCTACCTGAC GGCGTCGGCG
ATGTTCCGTG GGAAGATGAG CACGAAGGAG GTGGACCAGC AGATGATAAA CGTGCAGAAC AAGAACTCGT CGTACTTCGT
GGAGTGGATT CCCAACAACG TGAAGTCGAG CGTGTGCGAC ATTCCCCCCA CCGGCCTCTC CATGTCCTCC ACCTTCATGG
GCAACTCCAC CTCCATCCAG GAGATGTTCC GGCGCGTCTC CGATCAGTTC ACCGTCATGT TCAAGAGAAA GGCTTTCTTG
CATTGGTACA CCGCGGAGGG CATGGACGAG ATGGAGTTCA CTGAGGCTGA GAGCAACATG AACGACTTGG TGGCTGAGTA
CCAGCAGTAT CAAGACGCTG CCGCCATGGA AGAGGGAGAG GTTGACGAGG ACGAAGAAGA TGACCTGGCT GCATGAGAAT
GACATCATCT GCGAGAAACA CATGTAACAC TGTTTCACAT GGGACTAGTC GAAAACTACG TGTGATGCCA ACTATCTAAT
AATTTCTCTT CCTTATTCAT GTAATGAAAT TCATGTGTGA AGACTCTTTG TATATGGAAG GGAAGGGTGT GTTACATATT
TGTATAGTTA TTATGGTTTG ATTATTTGCA ATTTGAGGAT TTTGCTTTGC TGTTTTTGTT TCTCATTGCT TTTAATTGTT
CTGGGTTTTG TTTTTCTTGT TTGTTGTCAA TGTTAATGCT TTCACATAGT TTTTGTTTTC TATTTTATTC TCCTCCTCAC
CTTTTCTATC ATCTCCATGC CAATAATTGA TGTGCCAGTT GTATTACACG TGGAAAAAGT

[show][hide][copy]CDS

>Vigan.01G053500.01
ATGCAAGTTC TTGTCCCTTT CCACGTCCAG CTCATTACAC TACTTGGAGT AAGACACAGC CCCTTCCCAA CAAACCCACA
TGAACCTATT AATTCAACTT CCATTCATTT TTATTTTCAT GTTGACACTA AGAAATTCAA GTACCATTTT TATAAATCTT
ATCATCCCCT TTTGCCTTGT CCCTACAAAA GGACCAGCCC CTCTTCCTCT TCCCTTCTCA ACTTCTGCTG CATCACTACC
CTCTTCAATA TGAGAGAAAT CCTCCATGTT CAAGCTGGCC AATGTGGCAA CCAAATCGGA GGCAAGTTTT GGGAGGTGAT
GTGTGATGAA CATGGCATAG ATGCCACTGG AAATTACATA GGGGACTCTC ATCTTCAACT TGAGAGGGTT AACGTCTACT
ACAATGAAGC AAGTGGAGGA CGCTATGTTC CTCGAGCCGT GCTTATGGAC CTTGAACCGG GCACCATGGA CAGCTTGCGA
TCTGGTCCTT ATGGGAAAAT TTTCAGGCCT GATAACTTTG TCTTTGGTCA AAACGGAGCT GGAAACAACT GGGCCAAGGG
GCATTACACT GAGGGAGCAG AGCTTATTGA TTCTGTTCTT GATGTTGTTC GTAAAGAAGC TGAGAACTGT GACTGCTTGC
AGGGGTTTCA AATTTGTCAC TCACTGGGAG GTGGAACTGG GTCTGGAATG GGTACTTTAC TGATCTCAAA GATCAGAGAA
GAGTATCCAG ATAGGATGAT GTTGACATTC TCAGTGTTCC CTTCTCCTAA GGTCTCTGAC ACAGTGGTTG AACCCTACAA
TGCCACTCTC TCTGTTCACC AACTGGTTGA GAATGCAGAT GAATGCATGG TCCTTGACAA TGAAGCACTC TATGATATCT
GTTTCCGAAC ACTAAAGCTC ACAAATCCAA GTTTTGGTGA TCTGAACCAT TTGATCTCAA CAACAATGAG CGGAGTAACG
TGCTGCCTCC GCTTCCCCGG CCAACTCAAC TCCGACCTCC GGAAGCTGGC CGTGAACCTC ATCCCCTTCC CGCGGCTCCA
CTTCTTCATG GTGGGTTTCG CGCCGCTAAC CTCCCGCGGC TCCCAGCAGT ACCGCTCCCT CACGATCCCG GAGCTGACCC
AGCAGATGTG GGACGCGCGC AACATGATGT GCGCCGCCGA CCCTCGGCAC GGCCGCTACC TGACGGCGTC GGCGATGTTC
CGTGGGAAGA TGAGCACGAA GGAGGTGGAC CAGCAGATGA TAAACGTGCA GAACAAGAAC TCGTCGTACT TCGTGGAGTG
GATTCCCAAC AACGTGAAGT CGAGCGTGTG CGACATTCCC CCCACCGGCC TCTCCATGTC CTCCACCTTC ATGGGCAACT
CCACCTCCAT CCAGGAGATG TTCCGGCGCG TCTCCGATCA GTTCACCGTC ATGTTCAAGA GAAAGGCTTT CTTGCATTGG
TACACCGCGG AGGGCATGGA CGAGATGGAG TTCACTGAGG CTGAGAGCAA CATGAACGAC TTGGTGGCTG AGTACCAGCA
GTATCAAGAC GCTGCCGCCA TGGAAGAGGG AGAGGTTGAC GAGGACGAAG AAGATGACCT GGCTGCATGA

[show][hide][copy]PROTEIN

>Vigan.01G053500.01
MQVLVPFHVQ LITLLGVRHS PFPTNPHEPI NSTSIHFYFH VDTKKFKYHF YKSYHPLLPC PYKRTSPSSS SLLNFCCITT
LFNMREILHV QAGQCGNQIG GKFWEVMCDE HGIDATGNYI GDSHLQLERV NVYYNEASGG RYVPRAVLMD LEPGTMDSLR
SGPYGKIFRP DNFVFGQNGA GNNWAKGHYT EGAELIDSVL DVVRKEAENC DCLQGFQICH SLGGGTGSGM GTLLISKIRE
EYPDRMMLTF SVFPSPKVSD TVVEPYNATL SVHQLVENAD ECMVLDNEAL YDICFRTLKL TNPSFGDLNH LISTTMSGVT
CCLRFPGQLN SDLRKLAVNL IPFPRLHFFM VGFAPLTSRG SQQYRSLTIP ELTQQMWDAR NMMCAADPRH GRYLTASAMF
RGKMSTKEVD QQMINVQNKN SSYFVEWIPN NVKSSVCDIP PTGLSMSSTF MGNSTSIQEM FRRVSDQFTV MFKRKAFLHW
YTAEGMDEME FTEAESNMND LVAEYQQYQD AAAMEEGEVD EDEEDDLAA*