GBrowse Details

Vigan.01G054100.01

Basic Information:
Name: Vigan.01G054100.01
Multiple alignment
Variant Information
Position: Chr01:4100005..4102254 (- strand)
Length: 2250
Functional Information:
Description: Similar to Glutathione peroxidase. [V7CPA5, Phaseolus vulgaris]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: glutathione peroxidase activity (GO:0004602)
InterPro: Glutathione peroxidase (IPR000889)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:472.31,172.77,189.82,288.84,66.97,114.35,92.34,140.74
Automatic updates:
Name: NM_001248911 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527421 (LOC100527421), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:4100005..4100313 (- strand)
Length: 309
Type: three_prime_UTR
Position: Chr01:4100314..4100544 (- strand)
Length: 231
Type: CDS
Position: Chr01:4101066..4101184 (- strand)
Length: 119
Type: CDS
Position: Chr01:4101418..4101479 (- strand)
Length: 62
Type: CDS
Position: Chr01:4101666..4101742 (- strand)
Length: 77
Type: CDS
Position: Chr01:4101830..4102081 (- strand)
Length: 252
Type: CDS
Position: Chr01:4102082..4102254 (- strand)
Length: 173
Type: five_prime_UTR


>Vigan.01G054100.01
CCTCACCGTC ACCGATGCCG TCATCAGACA CAACCACATA AGTGGTTGAC GTTCACATAA TAATAGAACC ATGAAATCCT
GGTACTGGAC CCAGCTACGA GAATAAGAAG AACCAAGAAG GAAGGTGTCG CTCTACGCGG AATAAAGACG CTATAAATTA
CACTTATTTA CCAATGCTTT CTTCTTCAAC CACTCGCATC TTCATCCACA CAACAACTGC TATAAGATTA GCTTCTTCCA
CCTCCTCTTC TTCTTCTTCC TCCTCTCTTC GATTTCTCTC CAACCCTACC CTCTTCCGCC CTGTTTTGCA CGCTTATTTC
AAACCGCTTC CTTCAACCTC GTCCACCTCT TTGTTCTCCT CCTTTAGAAC CGATCACACT ATGGCCACCT CAAGCGCCAA
ATCAGTCCAC GATTTCAACG TTAAAGATGC TAAGGGAAAT GATATTAATC TTGGTGACTA CAAAGGGAAG GTCCTTATAA
TTGTCAACGT TGCCTCACAA TGTGGCTTGA CTAATTCGAA TTACACAGAG CTGAGTCAGT TATACGAGAA GTACAAACAA
AAAGGTCTGG AGATTCTAGC ATTCCCATGC AATCAGTTTG GGGCACAGGA GCCTGGATCT AATGAACAGA TACAAGATTT
TGTCTGTACT CGCTTCAAGG CTGAGTTTCC CGTTTTTAAC AAGGTTGATG TGAATGGTGA CAGTGCTGAT CCACTCTACA
AGTATCTAAA ATCAAGCAAA GGTGGACTCT TCGGGGATAA TATCAAATGG AACTTCTCCA AGTTCCTTGT TGATAAGGAG
GGGAAGGTTG TTGATCGCTA TGCACCCACA ACTTCTCCTC TGAGCATTGA GGTAAGACAA ATAGTATTAT GCACCAATAA
TTTGGCCTAT ACTTATCTGA TACTTTTACA CTAAAAATGC TTCTTTTTCT GATATCTGCA GAAGGACTTG TTGAAGTTGT
TGGATGCTTG AAGCTATGGA TGACTGCATC TGTCAATAAA TGAGTAGAGA TTAGAACATA ATTATAAATA AGAAAAGTGT
TGGAGATGTT GTTGCACTTT CCTGTCTGTC TTACATATAC TGAAACAGTT GCTCTTGTAC CTGGTACCTG ATATTATGTT
CATAACTATG ACATTGTCTA CTTAAACTTA AGCTTTCTAT TACATTGCTC TCGTATCATT ATCATTAAAT TATTAATTTT
AGAATTAAAT ATGTTTTTGT CCT

>Vigan.01G054100.01
ATGCTTTCTT CTTCAACCAC TCGCATCTTC ATCCACACAA CAACTGCTAT AAGATTAGCT TCTTCCACCT CCTCTTCTTC
TTCTTCCTCC TCTCTTCGAT TTCTCTCCAA CCCTACCCTC TTCCGCCCTG TTTTGCACGC TTATTTCAAA CCGCTTCCTT
CAACCTCGTC CACCTCTTTG TTCTCCTCCT TTAGAACCGA TCACACTATG GCCACCTCAA GCGCCAAATC AGTCCACGAT
TTCAACGTTA AAGATGCTAA GGGAAATGAT ATTAATCTTG GTGACTACAA AGGGAAGGTC CTTATAATTG TCAACGTTGC
CTCACAATGT GGCTTGACTA ATTCGAATTA CACAGAGCTG AGTCAGTTAT ACGAGAAGTA CAAACAAAAA GGTCTGGAGA
TTCTAGCATT CCCATGCAAT CAGTTTGGGG CACAGGAGCC TGGATCTAAT GAACAGATAC AAGATTTTGT CTGTACTCGC
TTCAAGGCTG AGTTTCCCGT TTTTAACAAG GTTGATGTGA ATGGTGACAG TGCTGATCCA CTCTACAAGT ATCTAAAATC
AAGCAAAGGT GGACTCTTCG GGGATAATAT CAAATGGAAC TTCTCCAAGT TCCTTGTTGA TAAGGAGGGG AAGGTTGTTG
ATCGCTATGC ACCCACAACT TCTCCTCTGA GCATTGAGGT AAGACAAATA GTATTATGCA CCAATAATTT GGCCTATACT
TATCTGATAC TTTTACACTA A

>Vigan.01G054100.01
MLSSSTTRIF IHTTTAIRLA SSTSSSSSSS SLRFLSNPTL FRPVLHAYFK PLPSTSSTSL FSSFRTDHTM ATSSAKSVHD
FNVKDAKGND INLGDYKGKV LIIVNVASQC GLTNSNYTEL SQLYEKYKQK GLEILAFPCN QFGAQEPGSN EQIQDFVCTR
FKAEFPVFNK VDVNGDSADP LYKYLKSSKG GLFGDNIKWN FSKFLVDKEG KVVDRYAPTT SPLSIEVRQI VLCTNNLAYT
YLILLH*