GBrowse Details

Vigan.01G064000.01

Basic Information:
Name: Vigan.01G064000.01
Multiple alignment
Variant Information
Position: Chr01:5018356..5022064 (+ strand)
Length: 3709
Functional Information:
Description: Similar to calnexin homolog. [XP_003532294.1, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Cellular Component: endoplasmic reticulum (GO:0005783)
Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: protein binding (GO:0005515)
Molecular Function: unfolded protein binding (GO:0051082)
InterPro: Calreticulin/calnexin (IPR001580)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Calreticulin/calnexin, P domain (IPR009033)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Calreticulin/calnexin, conserved site (IPR018124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.17,74.99,82.94,43.16,214.41,171.03,62.08,67.76
Arabidopsis thaliana homolog: AT5G07340.2, AT5G61790.1
Automatic updates:
Name: NM_001248187 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calnexin (LOC547851), mRNA.
PubMed ID: 26645455 NCBI(pubmed)
12228545 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:5018356..5018441 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr01:5018442..5018546 (+ strand)
Length: 105
Type: CDS
Position: Chr01:5018667..5018736 (+ strand)
Length: 70
Type: CDS
Position: Chr01:5020059..5021185 (+ strand)
Length: 1127
Type: CDS
Position: Chr01:5021292..5021363 (+ strand)
Length: 72
Type: CDS
Position: Chr01:5021449..5021565 (+ strand)
Length: 117
Type: CDS
Position: Chr01:5021681..5021815 (+ strand)
Length: 135
Type: CDS
Position: Chr01:5021816..5022064 (+ strand)
Length: 249
Type: three_prime_UTR


>Vigan.01G064000.01
TAACACAGCA CTGACATTTA ACCACTTTCT AGAGATCCCT AAGTTCTCTT CTGTTTCAGG TTAGGGTTTC ACAGTCACAG
TGAAACATGG GAGAACGGAA GCGAATTCCT CTCGCGATCT TTGCTGTGCT CTTCTTGGTT TCTGCCTCTT CTTTTCCGCT
TCTCCGCGCT TCGGACGACG CAGATGATGC TATCTTCTAC GAGTCATTCG ATGAGGATTT TGAAGACCGT TGGATCGTGT
CTCAGAAAGA TGAATACAGT GGTGTCTGGA AACATGCCAA GAGTGAGGGA CATGAGGATT ATGGTCTTCT TGTCAGTGAG
AAAGCAAGGA AATACGCCAT AGTGAAGGAA CTTGAAGAGG CAGTGGGTCT CAAGGACGGA ACTGTTGTTC TCCAGTTTGA
AACTCGGCTT CAGAATGGCC TTGAATGCGG TGGAGCTTAT CTAAAATATC TGCGACCACA GGATGCTGGA TGGAAATCTA
AGGAATTTGA CAACGAATCT CCGTATTCTA TCATGTTTGG TCCTGATAAG TGTGGGGCCA CAAACAAAGT ACACTTCATT
TTCAAACACA AGAATCCCAA GAGTGGGGAG TATGTTGAGC ACCACCTTAA GCATCCCCCT TCTGTCCCTT CTGATAAATT
GTCTCATGTT TACACGGCTA TTTTGACGGC TGACAATGAG GTGCAAGTTT TGATAGATGG GGAACAGAAG AAGAAGGCAA
ACTTCTTAAG TGCTGATGAT TTTGAACCTC CTCTTATCCC TTCCAAGACA ATCCCAGATC CTGAAGATAA GAAGCCGGAG
GACTGGGATG AGAGAGAGAA AATTCCAGAC CCAAGTGCGG TAAAGCCAGA GGACTGGGAT GAGGATGCAC CCTTGGAAAT
TGTTGATGAA GAAGCTGAAA AACCTGAAGG ATGGTTAGAC GATGAACCTG AGGAGATAGA TGATCCAGAG GCAACAAAAC
CGGAAGATTG GGACGATGAG GAGGATGGTG AATGGGAAGC CCCAAAGATT GAGAACCCAA AATGCGAAGC CGGCCCAGGC
TGTGGTGAGT GGAAGAGGCC AATGAAGAGG AATCCTGCTT ATAAGGGAAA ATGGCATGCC CCACTTATTG AAAATCCTGC
TTATAAGGGT ATATGGAAGC CTAGGGATAT TCCAAACCCT GCTTACTTTG AACTAAAAAA ACCTGATTTT GAGCCAATCG
CTGCTATTGG TATTGAGATT TGGACAATGC AAGATGGCAT TTTGTTTGAC AACATCTTGA TAGCTAAAGA TGATAAAATT
GCTGAGTCGT ATCGGGAGAC TACTTGGAAA CCCAAGTTTT CAGTTGAAAA AGAAAAACAG AAGGCAGAGG AAGCTGCAGC
TGGATCGAGT GGTCTTGCAG GATTCCAGAA GAAGGTGTTT GACCTCTTAT ATAAGATCGC AGACATTCCT TTCCTGAGTG
CCTATAAGCC TAAAATCCTT GATCTCATCG AGAAAGGTGA AGAGCAACCC AATCTCACTG TTGGCATTCT GGTAGCCATT
TTGGTTGTCT TCGTGTCAAT TTTCTTCAGG ATTATATTTG GTGGGAAGAA GAAGCCCACA AGGGTGGAGA AGACAAACTT
AGAACCCGCG GAAAGTGCTT CTAACCAAAA AAGTGGTGAG AATGAAGAAA ACAAAGAGAA GGAGGAATCG TCTGCTCCTC
CACGTCGTAG GTCAACAAGG AGAGAGAATT GAAATATGAT TGAATCGCTT GACAGGGGCG GCCATTGAAG AACACTACCG
CACTTAAATT TTGAGCTTAG TTGAGCATTA GGCACGAAGG AGTGTAGATC ATTTTTGTGT TGTCTTGGAG ACTTCAAAGT
AGTATTTTGT ATGTTTTTGT ATCATGGGTT GGTCCCTTTG TGTTGTGTTG GTCACCTCTT TTTAAGCTAA TTCAGGATGC
TGGAACCATT ACAATTATTT TCTATTTTTG TTTTTAAGCC A

>Vigan.01G064000.01
ATGGGAGAAC GGAAGCGAAT TCCTCTCGCG ATCTTTGCTG TGCTCTTCTT GGTTTCTGCC TCTTCTTTTC CGCTTCTCCG
CGCTTCGGAC GACGCAGATG ATGCTATCTT CTACGAGTCA TTCGATGAGG ATTTTGAAGA CCGTTGGATC GTGTCTCAGA
AAGATGAATA CAGTGGTGTC TGGAAACATG CCAAGAGTGA GGGACATGAG GATTATGGTC TTCTTGTCAG TGAGAAAGCA
AGGAAATACG CCATAGTGAA GGAACTTGAA GAGGCAGTGG GTCTCAAGGA CGGAACTGTT GTTCTCCAGT TTGAAACTCG
GCTTCAGAAT GGCCTTGAAT GCGGTGGAGC TTATCTAAAA TATCTGCGAC CACAGGATGC TGGATGGAAA TCTAAGGAAT
TTGACAACGA ATCTCCGTAT TCTATCATGT TTGGTCCTGA TAAGTGTGGG GCCACAAACA AAGTACACTT CATTTTCAAA
CACAAGAATC CCAAGAGTGG GGAGTATGTT GAGCACCACC TTAAGCATCC CCCTTCTGTC CCTTCTGATA AATTGTCTCA
TGTTTACACG GCTATTTTGA CGGCTGACAA TGAGGTGCAA GTTTTGATAG ATGGGGAACA GAAGAAGAAG GCAAACTTCT
TAAGTGCTGA TGATTTTGAA CCTCCTCTTA TCCCTTCCAA GACAATCCCA GATCCTGAAG ATAAGAAGCC GGAGGACTGG
GATGAGAGAG AGAAAATTCC AGACCCAAGT GCGGTAAAGC CAGAGGACTG GGATGAGGAT GCACCCTTGG AAATTGTTGA
TGAAGAAGCT GAAAAACCTG AAGGATGGTT AGACGATGAA CCTGAGGAGA TAGATGATCC AGAGGCAACA AAACCGGAAG
ATTGGGACGA TGAGGAGGAT GGTGAATGGG AAGCCCCAAA GATTGAGAAC CCAAAATGCG AAGCCGGCCC AGGCTGTGGT
GAGTGGAAGA GGCCAATGAA GAGGAATCCT GCTTATAAGG GAAAATGGCA TGCCCCACTT ATTGAAAATC CTGCTTATAA
GGGTATATGG AAGCCTAGGG ATATTCCAAA CCCTGCTTAC TTTGAACTAA AAAAACCTGA TTTTGAGCCA ATCGCTGCTA
TTGGTATTGA GATTTGGACA ATGCAAGATG GCATTTTGTT TGACAACATC TTGATAGCTA AAGATGATAA AATTGCTGAG
TCGTATCGGG AGACTACTTG GAAACCCAAG TTTTCAGTTG AAAAAGAAAA ACAGAAGGCA GAGGAAGCTG CAGCTGGATC
GAGTGGTCTT GCAGGATTCC AGAAGAAGGT GTTTGACCTC TTATATAAGA TCGCAGACAT TCCTTTCCTG AGTGCCTATA
AGCCTAAAAT CCTTGATCTC ATCGAGAAAG GTGAAGAGCA ACCCAATCTC ACTGTTGGCA TTCTGGTAGC CATTTTGGTT
GTCTTCGTGT CAATTTTCTT CAGGATTATA TTTGGTGGGA AGAAGAAGCC CACAAGGGTG GAGAAGACAA ACTTAGAACC
CGCGGAAAGT GCTTCTAACC AAAAAAGTGG TGAGAATGAA GAAAACAAAG AGAAGGAGGA ATCGTCTGCT CCTCCACGTC
GTAGGTCAAC AAGGAGAGAG AATTGA

>Vigan.01G064000.01
MGERKRIPLA IFAVLFLVSA SSFPLLRASD DADDAIFYES FDEDFEDRWI VSQKDEYSGV WKHAKSEGHE DYGLLVSEKA
RKYAIVKELE EAVGLKDGTV VLQFETRLQN GLECGGAYLK YLRPQDAGWK SKEFDNESPY SIMFGPDKCG ATNKVHFIFK
HKNPKSGEYV EHHLKHPPSV PSDKLSHVYT AILTADNEVQ VLIDGEQKKK ANFLSADDFE PPLIPSKTIP DPEDKKPEDW
DEREKIPDPS AVKPEDWDED APLEIVDEEA EKPEGWLDDE PEEIDDPEAT KPEDWDDEED GEWEAPKIEN PKCEAGPGCG
EWKRPMKRNP AYKGKWHAPL IENPAYKGIW KPRDIPNPAY FELKKPDFEP IAAIGIEIWT MQDGILFDNI LIAKDDKIAE
SYRETTWKPK FSVEKEKQKA EEAAAGSSGL AGFQKKVFDL LYKIADIPFL SAYKPKILDL IEKGEEQPNL TVGILVAILV
VFVSIFFRII FGGKKKPTRV EKTNLEPAES ASNQKSGENE ENKEKEESSA PPRRRSTRRE N*