VIGGS:GBrowse

Vigan.01G065100.01

Basic Information:

Name:	Vigan.01G065100.01 Multiple alignment Variant Information
Position:	Chr01:5121945..5128145 (- strand)
Length:	6201

Functional Information:

Description:	Similar to Calcium-dependent protein kinase SK5. [P28583, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: calcium ion binding (GO:0005509)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	EF-hand domain (IPR002048)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	EF-hand domain pair (IPR011992)
	Protein kinase, ATP binding site (IPR017441)
	EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:9.05,7.66,7.01,23.31,7.71,24.64,22.03,10.47
Arabidopsis thaliana homolog:	AT1G18890.1, AT1G35670.1, AT1G50700.1, AT1G61950.1, AT1G74740.1, AT1G76040.2, AT2G17290.1, AT2G38910.1, AT3G10660.1, AT3G20410.1, AT3G51850.1, AT3G57530.1, AT4G04720.1, AT4G09570.1, AT4G21940.2, AT4G23650.1, AT4G35310.1, AT4G38230.2, AT5G04870.1, AT5G12180.1, AT5G12480.1, AT5G19360.1, AT5G19450.1, AT5G23580.1

Automatic updates:

Name:	NM_001255033 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calcium-dependent protein kinase SK5-like (LOC100806678), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:5121945..5122353 (- strand)
Length:	409
Type:	three_prime_UTR

Position:	Chr01:5122354..5122509 (- strand)
Length:	156
Type:	CDS

Position:	Chr01:5122643..5122867 (- strand)
Length:	225
Type:	CDS

Position:	Chr01:5123235..5123402 (- strand)
Length:	168
Type:	CDS

Position:	Chr01:5124884..5124999 (- strand)
Length:	116
Type:	CDS

Position:	Chr01:5125105..5125257 (- strand)
Length:	153
Type:	CDS

Position:	Chr01:5125356..5125499 (- strand)
Length:	144
Type:	CDS

Position:	Chr01:5127120..5127675 (- strand)
Length:	556
Type:	CDS

Position:	Chr01:5127676..5128145 (- strand)
Length:	470
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G065100.01
CTTGTATAAA GACTAAAATA AAATAAAGAT ATATTTGGTA TATTTATTTG ACAAGTGGTG CAGATGTCTG CGGATATAAT
TGGGGAAAAG CATCATCAGA TATTTAATAA TCTCACATCA CAACACAAAA CAACATCAAC TTGTGTCCGC AATTCAGTGT
TCGGCAGTTC ATTCAACTCG TTCAATTCAA ACTTCAAAGC AAAACACCCA TAGTTCTTAC AAGAAGCACA AATTTGCACA
CACTCTCTTT CTTCTTGGCC TAAATTTCAT TCCATTTCCG CTTCCATGAC ATCTTCCGAG GAGAGAGAAC ATAATACACC
ATGCCCAAGA ACACGTTCAC ACTTGTAACT CGTAGCCACC ACCACACCAC CTGAAAAATA CAAACTTTTC TTTCTGTTCC
AAACTTAAAC GCACTGCACT GCCGTTGACT ACTTTAAAGG TTTGTTTTCT GGGTGACCCG ACAGAGAACA ATGGCGGCGA
AATCGAGTTC GAGTTCAACA AACGTGACGG TGAAAGCGGC GTGGGTTTTG CCACACCGAA CGCAGAACAT CCAGGAGGTG
TACGAGGTGG GTAGAAAGCT GGGGCAGGGC CAGTTCGGGA CGACGTTCCT GTGCACGCGC CGCGCGACTG GAGGAAAGTT
CGCGTGCAAG TCGATTCCCA AGCGGAAGCT TCTGTGCAGG GAGGACTACG AGGACGTGTG GCGGGAGATT CAGATAATGC
ACCACTTGTC TGAGCACGCT AACGTGGTTC GCATCGAGGG CGCGTACGAG GACACTTCCG CCGTGCACCT CGTCATGGAG
CTCTGCGAGG GCGGCGAGCT CTTCGACCGG ATCGTCCAGA AGGGCCACTA CAGTGAGAGA CAAGCGGCGA GGTTGATAAA
GACCATTGTT GAGGTTGTCG AGGCTTGTCA CTCGCTTGGA GTCATGCATA GGGACCTCAA GCCCGAAAAC TTTCTCTTTG
ACACTGTTGA CGAGGATGCC AAGCTAAAAG CTACCGATTT CGGGTTGTCC GTTTTTTACA AGCCTGGTGA ATCGTTCTGC
GACGTTGTCG GGAGCCCATA CTATGTTGCA CCAGAGGTCT TGCGCAAGCT CTATGGGCCT GAATCAGATG TGTGGAGTGC
AGGGGTTATT TTGTACATTT TATTGAGTGG GGTGCCACCA TTTTGGGCTG AAACTGAACC AGGGATCTTC AAACAGATTT
TACTGGGAAA ACTTGATTTT CAATCTGAGC CTTGGCCTAG CATTTCAGAC AGTGCCAAGG ATCTAATTCG GAAAATGCTT
GATCAAAATC CAAAAACCAG GCTTACAGCA CATGAAGTAC TCCGCCACCC ATGGATTGTT GATGACAGCA TTGCACCAGA
TAAACCTCTA GATTCTGCAG TTTTATCACG CCTGAAACAG TTCTCTGCAA TGAATAAACT GAAAAAGATG GCATTGCGGG
TTATTGCCGA GAGGCTGTCT GAAGAAGAAA TTGGTGGCCT GAAAGAGTTA TTCAAGATGA TTGACACTGA CAACAGTGGA
TCCATAACAT TTGATGAATT AAAAGACGGC CTGAAGCGAG TAGGATCTGA ACTTATGGAG TCTGAAATCA AGGATCTCAT
GGATGCTGCA GATATTGATA AAAGTGGAAC AATAGATTAT GGTGAATTTA TTGCTGCCAC TGTTCATTTA AACAAGCTGG
AGAGAGAGGA AAACCTGGTG TCAGCCTTCT CCTATTTTGA CAAGGATGGT AGTGGTTACA TAACCCTTGA TGAGATACAA
CAAGCTTGTA AGGACTTTGG TTTAGACGAT GTTCATATTG ATGACATGAT CAAGGAAATT GACCAAGATA ATGATGGGCA
AATAGATTAT GGGGAATTCA CAGCCATGAT GAGAAAGGGC AATGGAGGAA TTGGAAGGAG AACAATGAGA AAAACACTGA
ATTTAAGAGA TGCTTTTGGG TTAGTAGACA ATGGCTCCAA TCAAGTTATT GAGGGCTACT TTAAGTAACT TCTTGCAGAC
AAAATTCACA AAAAAATTAA TTTAGTAAGT TTCTACCTTG TTTGTAGCTT CTTGACCAAA TTTTGCTTAT CTATTGAAAG
ACCCATCTTT TCTGGAATTT TTTTTTTCAT ATTCACTGAT TTTTATTTTA TTTTTATCTT AATCAACAAC CTCAATTATG
GTTGATTCAA GGTTAGACTG TAGTAGTTGT TACGCATTCA TTACTGAGAT TATAAAAACG TTGAAAAATT ATGGTGCCTC
TTTTTTTCTA CAAGATATCA TGTCATTGGC CCATTACCTT ATCTTAGGAC CACCAAAAGG CACTTTCTTA TCTTGTACAT
AGTTATAATG TATGGGTTTT CCAAATACAT TAAAGACCTT CTGATTTGGA ATAATTTATT GAAAAATTAC ATTCTAG

[show][hide][copy]CDS

>Vigan.01G065100.01
ATGGCGGCGA AATCGAGTTC GAGTTCAACA AACGTGACGG TGAAAGCGGC GTGGGTTTTG CCACACCGAA CGCAGAACAT
CCAGGAGGTG TACGAGGTGG GTAGAAAGCT GGGGCAGGGC CAGTTCGGGA CGACGTTCCT GTGCACGCGC CGCGCGACTG
GAGGAAAGTT CGCGTGCAAG TCGATTCCCA AGCGGAAGCT TCTGTGCAGG GAGGACTACG AGGACGTGTG GCGGGAGATT
CAGATAATGC ACCACTTGTC TGAGCACGCT AACGTGGTTC GCATCGAGGG CGCGTACGAG GACACTTCCG CCGTGCACCT
CGTCATGGAG CTCTGCGAGG GCGGCGAGCT CTTCGACCGG ATCGTCCAGA AGGGCCACTA CAGTGAGAGA CAAGCGGCGA
GGTTGATAAA GACCATTGTT GAGGTTGTCG AGGCTTGTCA CTCGCTTGGA GTCATGCATA GGGACCTCAA GCCCGAAAAC
TTTCTCTTTG ACACTGTTGA CGAGGATGCC AAGCTAAAAG CTACCGATTT CGGGTTGTCC GTTTTTTACA AGCCTGGTGA
ATCGTTCTGC GACGTTGTCG GGAGCCCATA CTATGTTGCA CCAGAGGTCT TGCGCAAGCT CTATGGGCCT GAATCAGATG
TGTGGAGTGC AGGGGTTATT TTGTACATTT TATTGAGTGG GGTGCCACCA TTTTGGGCTG AAACTGAACC AGGGATCTTC
AAACAGATTT TACTGGGAAA ACTTGATTTT CAATCTGAGC CTTGGCCTAG CATTTCAGAC AGTGCCAAGG ATCTAATTCG
GAAAATGCTT GATCAAAATC CAAAAACCAG GCTTACAGCA CATGAAGTAC TCCGCCACCC ATGGATTGTT GATGACAGCA
TTGCACCAGA TAAACCTCTA GATTCTGCAG TTTTATCACG CCTGAAACAG TTCTCTGCAA TGAATAAACT GAAAAAGATG
GCATTGCGGG TTATTGCCGA GAGGCTGTCT GAAGAAGAAA TTGGTGGCCT GAAAGAGTTA TTCAAGATGA TTGACACTGA
CAACAGTGGA TCCATAACAT TTGATGAATT AAAAGACGGC CTGAAGCGAG TAGGATCTGA ACTTATGGAG TCTGAAATCA
AGGATCTCAT GGATGCTGCA GATATTGATA AAAGTGGAAC AATAGATTAT GGTGAATTTA TTGCTGCCAC TGTTCATTTA
AACAAGCTGG AGAGAGAGGA AAACCTGGTG TCAGCCTTCT CCTATTTTGA CAAGGATGGT AGTGGTTACA TAACCCTTGA
TGAGATACAA CAAGCTTGTA AGGACTTTGG TTTAGACGAT GTTCATATTG ATGACATGAT CAAGGAAATT GACCAAGATA
ATGATGGGCA AATAGATTAT GGGGAATTCA CAGCCATGAT GAGAAAGGGC AATGGAGGAA TTGGAAGGAG AACAATGAGA
AAAACACTGA ATTTAAGAGA TGCTTTTGGG TTAGTAGACA ATGGCTCCAA TCAAGTTATT GAGGGCTACT TTAAGTAA

[show][hide][copy]PROTEIN

>Vigan.01G065100.01
MAAKSSSSST NVTVKAAWVL PHRTQNIQEV YEVGRKLGQG QFGTTFLCTR RATGGKFACK SIPKRKLLCR EDYEDVWREI
QIMHHLSEHA NVVRIEGAYE DTSAVHLVME LCEGGELFDR IVQKGHYSER QAARLIKTIV EVVEACHSLG VMHRDLKPEN
FLFDTVDEDA KLKATDFGLS VFYKPGESFC DVVGSPYYVA PEVLRKLYGP ESDVWSAGVI LYILLSGVPP FWAETEPGIF
KQILLGKLDF QSEPWPSISD SAKDLIRKML DQNPKTRLTA HEVLRHPWIV DDSIAPDKPL DSAVLSRLKQ FSAMNKLKKM
ALRVIAERLS EEEIGGLKEL FKMIDTDNSG SITFDELKDG LKRVGSELME SEIKDLMDAA DIDKSGTIDY GEFIAATVHL
NKLEREENLV SAFSYFDKDG SGYITLDEIQ QACKDFGLDD VHIDDMIKEI DQDNDGQIDY GEFTAMMRKG NGGIGRRTMR
KTLNLRDAFG LVDNGSNQVI EGYFK*