GBrowse Details

Vigan.01G065300.01

Basic Information:
Name: Vigan.01G065300.01
Multiple alignment
Variant Information
Position: Chr01:5146597..5157575 (+ strand)
Length: 10979
Functional Information:
Description: Similar to E3 ubiquitin-protein ligase CHFR-like. [XP_004503861.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, C3HC4 RING-type (IPR018957)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.95,10.73,3.64,1.06,2.07,6.44,1.82,3.26
Arabidopsis thaliana homolog: AT1G47570.1
Automatic updates:
Name: NM_001255911 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max E3 ubiquitin-protein ligase CHFR-like (LOC100805618), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:5146597..5146683 (+ strand)
Length: 87
Type: five_prime_UTR
Position: Chr01:5146684..5146753 (+ strand)
Length: 70
Type: CDS
Position: Chr01:5147669..5147819 (+ strand)
Length: 151
Type: CDS
Position: Chr01:5148715..5148812 (+ strand)
Length: 98
Type: CDS
Position: Chr01:5149444..5149505 (+ strand)
Length: 62
Type: CDS
Position: Chr01:5149601..5149692 (+ strand)
Length: 92
Type: CDS
Position: Chr01:5149783..5149906 (+ strand)
Length: 124
Type: CDS
Position: Chr01:5151038..5151124 (+ strand)
Length: 87
Type: CDS
Position: Chr01:5153562..5153652 (+ strand)
Length: 91
Type: CDS
Position: Chr01:5154087..5154194 (+ strand)
Length: 108
Type: CDS
Position: Chr01:5154365..5154465 (+ strand)
Length: 101
Type: CDS
Position: Chr01:5155015..5155080 (+ strand)
Length: 66
Type: CDS
Position: Chr01:5155173..5155260 (+ strand)
Length: 88
Type: CDS
Position: Chr01:5155904..5155964 (+ strand)
Length: 61
Type: CDS
Position: Chr01:5156622..5156685 (+ strand)
Length: 64
Type: CDS
Position: Chr01:5157279..5157410 (+ strand)
Length: 132
Type: CDS
Position: Chr01:5157411..5157575 (+ strand)
Length: 165
Type: three_prime_UTR


>Vigan.01G065300.01
TATCAATCAA TATCAACAAA CCTTTCAAGT TTGAACTTGA ACCTTTGTAC TCCACTTCAC CCACCAAAGA GGCTTTTCCT
GTGATCAATG GAGGAAACAG GAGAATGCTC TTCTTCAACT TCAGCAAAGC ACTTAGATGA AATTTGGGCC AAACTTGTTC
CATCAGACGA GAGATATTCA GATGTGGAGA TAAGGTCAGA TGAAAAAGTA ATATCTTCAG AGATATCAGC TAATTCTAGT
GACAAACATA GCTGGTGCAA AATAGTACGG AATCCTGACC TATGTTCGGC CACAATGGAG AACAAGAGTC AAGATACAAT
TCTTGTTGAT GGGGCTGTGA TACACAGTGA TGACACCATT GTCATTAAGG ATGGAAGCCA AATTATCCCA GGTCCTGATA
GGGAAGGATT TGTCAGCTAC AAATTTCATA TAATGTCTAG CCCAGATGGC TCCCAGAGGC AGCTAAAGAT ATGTGTAGAT
GCTGATCACG CGAAGTGTAG CATTTGCTTA AACATATGGC ATGATGTTGT TACTGTAGCT CCATGCCTTC ATAATTTTTG
CAATGGTTGC TTCTCAGAGT GGTTAAGGAG ATCAAAGGAA AGACATTCAG CTGTACTTTG TCCTCAATGC AGAGCAGTAG
TTCACTTTGT TGGAAAAAAT CACTTTTTGC GTATAATTGC TGAGGATATG CTGAGGGCTG ATTCTTCACT GAGACGCCCA
CATGATGAAG TTTCACTTTT AGATTCTTAT GCATTAGTAC GATCAAACCT TGTCATTGGA TCTGGAAAGA AGAATCGAAA
GAGGGCTTAC ACACCACTGG ATGATCAAAG TGATGGCACA TATCATCAGT GCCCACAGTG TGATACTGAA GTTGGTGGAT
TTGGTTGCAA ACATGACACT GTTCATCTCC AATGTCAAGC ATGTGGAGGA ATGATGCCTT CCCGTACTGG TTTTGGCATT
CCTCAGTATT GTTCAGGATG TGATAGACCA TTCTGTGGAG CTTACTGGCA TGCTCTAGGA GTAACCGGGA ATGGCTCTTA
CCCTGTTTGC TCCCAGGATA CATTTAGGCC TATCTCAGAA CACCCTATTT CGAGCATTCC ATTGTTAACA CATGAAAAGA
ATCTTCATGA ACAGAAGATA ACTGATAGTT GCATTAGACA AATGGGAAGG ACATTGACGG ATGTGATATC AGAGTGGATA
CAAAAGCTGG ACAACAGAGA AATCGATAGA TCGCGAATGA TGCTAAATCA TGCTGAGACG ATTACTGCTC GAACTTTTGT
ATGCCGTGAC TGTCATCATA AGTTGGTGTC ATTTCTCCTT TACTGGTTTC GCGTCTGTAT ACCCAAATCT CTTCTTCCAC
CAGATGCATC AGCAAGACAA GATTGCTGGT ATGGATATGC ATGTCGAACA CAGCACCGTA GTGAAGAGCA TGCTCGTAAG
AGAAATCATG TGTGCCGTCC AACCAGAGGC TCAAACGTGT GACTATAATG TCAGCATTTT TCTTTCAAGT TCGAACCGTT
TTCTTATTCT TCCCTTTTCA ACAATACTTT GTGTTGTGTC AGTTAGACTT TTCCTCTTGT TGGAGCAATG ACGCTAATTC
CTGGATTCAA AGCAGTTCAA AATTTAAAAA GTGGTGATTA TCTAGCA

>Vigan.01G065300.01
ATGGAGGAAA CAGGAGAATG CTCTTCTTCA ACTTCAGCAA AGCACTTAGA TGAAATTTGG GCCAAACTTG TTCCATCAGA
CGAGAGATAT TCAGATGTGG AGATAAGGTC AGATGAAAAA GTAATATCTT CAGAGATATC AGCTAATTCT AGTGACAAAC
ATAGCTGGTG CAAAATAGTA CGGAATCCTG ACCTATGTTC GGCCACAATG GAGAACAAGA GTCAAGATAC AATTCTTGTT
GATGGGGCTG TGATACACAG TGATGACACC ATTGTCATTA AGGATGGAAG CCAAATTATC CCAGGTCCTG ATAGGGAAGG
ATTTGTCAGC TACAAATTTC ATATAATGTC TAGCCCAGAT GGCTCCCAGA GGCAGCTAAA GATATGTGTA GATGCTGATC
ACGCGAAGTG TAGCATTTGC TTAAACATAT GGCATGATGT TGTTACTGTA GCTCCATGCC TTCATAATTT TTGCAATGGT
TGCTTCTCAG AGTGGTTAAG GAGATCAAAG GAAAGACATT CAGCTGTACT TTGTCCTCAA TGCAGAGCAG TAGTTCACTT
TGTTGGAAAA AATCACTTTT TGCGTATAAT TGCTGAGGAT ATGCTGAGGG CTGATTCTTC ACTGAGACGC CCACATGATG
AAGTTTCACT TTTAGATTCT TATGCATTAG TACGATCAAA CCTTGTCATT GGATCTGGAA AGAAGAATCG AAAGAGGGCT
TACACACCAC TGGATGATCA AAGTGATGGC ACATATCATC AGTGCCCACA GTGTGATACT GAAGTTGGTG GATTTGGTTG
CAAACATGAC ACTGTTCATC TCCAATGTCA AGCATGTGGA GGAATGATGC CTTCCCGTAC TGGTTTTGGC ATTCCTCAGT
ATTGTTCAGG ATGTGATAGA CCATTCTGTG GAGCTTACTG GCATGCTCTA GGAGTAACCG GGAATGGCTC TTACCCTGTT
TGCTCCCAGG ATACATTTAG GCCTATCTCA GAACACCCTA TTTCGAGCAT TCCATTGTTA ACACATGAAA AGAATCTTCA
TGAACAGAAG ATAACTGATA GTTGCATTAG ACAAATGGGA AGGACATTGA CGGATGTGAT ATCAGAGTGG ATACAAAAGC
TGGACAACAG AGAAATCGAT AGATCGCGAA TGATGCTAAA TCATGCTGAG ACGATTACTG CTCGAACTTT TGTATGCCGT
GACTGTCATC ATAAGTTGGT GTCATTTCTC CTTTACTGGT TTCGCGTCTG TATACCCAAA TCTCTTCTTC CACCAGATGC
ATCAGCAAGA CAAGATTGCT GGTATGGATA TGCATGTCGA ACACAGCACC GTAGTGAAGA GCATGCTCGT AAGAGAAATC
ATGTGTGCCG TCCAACCAGA GGCTCAAACG TGTGA

>Vigan.01G065300.01
MEETGECSSS TSAKHLDEIW AKLVPSDERY SDVEIRSDEK VISSEISANS SDKHSWCKIV RNPDLCSATM ENKSQDTILV
DGAVIHSDDT IVIKDGSQII PGPDREGFVS YKFHIMSSPD GSQRQLKICV DADHAKCSIC LNIWHDVVTV APCLHNFCNG
CFSEWLRRSK ERHSAVLCPQ CRAVVHFVGK NHFLRIIAED MLRADSSLRR PHDEVSLLDS YALVRSNLVI GSGKKNRKRA
YTPLDDQSDG TYHQCPQCDT EVGGFGCKHD TVHLQCQACG GMMPSRTGFG IPQYCSGCDR PFCGAYWHAL GVTGNGSYPV
CSQDTFRPIS EHPISSIPLL THEKNLHEQK ITDSCIRQMG RTLTDVISEW IQKLDNREID RSRMMLNHAE TITARTFVCR
DCHHKLVSFL LYWFRVCIPK SLLPPDASAR QDCWYGYACR TQHRSEEHAR KRNHVCRPTR GSNV*