GBrowse Details

Vigan.01G069200.01

Basic Information:
Name: Vigan.01G069200.01
Multiple alignment
Variant Information
Position: Chr01:5546082..5550998 (+ strand)
Length: 4917
Functional Information:
Description: Similar to Aldehyde dehydrogenase. [I1KNX5, Glycine max]
GO: Biological Process: cellular aldehyde metabolic process (GO:0006081)
Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
InterPro: Aldehyde dehydrogenase NAD(P)-dependent (IPR012394)
Aldehyde dehydrogenase domain (IPR015590)
Aldehyde dehydrogenase, conserved site (IPR016160)
Aldehyde/histidinol dehydrogenase (IPR016161)
Aldehyde dehydrogenase, N-terminal (IPR016162)
Aldehyde dehydrogenase, C-terminal (IPR016163)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.20,2.66,27.31,34.92,1.68,8.25,0.82,13.37
Arabidopsis thaliana homolog: AT1G44170.1, AT4G34240.1
Automatic updates:
Name: NM_001367164 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aldehyde dehydrogenase family 3 member I1 (ALDH3I1), mRNA.
PubMed ID: 28687067 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:5546082..5546424 (+ strand)
Length: 343
Type: five_prime_UTR
Position: Chr01:5546425..5546537 (+ strand)
Length: 113
Type: CDS
Position: Chr01:5546759..5546860 (+ strand)
Length: 102
Type: CDS
Position: Chr01:5546983..5547226 (+ strand)
Length: 244
Type: CDS
Position: Chr01:5547396..5547464 (+ strand)
Length: 69
Type: CDS
Position: Chr01:5547538..5547634 (+ strand)
Length: 97
Type: CDS
Position: Chr01:5548076..5548282 (+ strand)
Length: 207
Type: CDS
Position: Chr01:5548521..5548636 (+ strand)
Length: 116
Type: CDS
Position: Chr01:5548713..5548817 (+ strand)
Length: 105
Type: CDS
Position: Chr01:5548893..5549065 (+ strand)
Length: 173
Type: CDS
Position: Chr01:5549150..5549240 (+ strand)
Length: 91
Type: CDS
Position: Chr01:5549467..5549616 (+ strand)
Length: 150
Type: CDS
Position: Chr01:5550411..5550644 (+ strand)
Length: 234
Type: CDS
Position: Chr01:5550645..5550998 (+ strand)
Length: 354
Type: three_prime_UTR


>Vigan.01G069200.01
CTTTACTCAT TTTACTGGCT TTGATTCAGT GACTGTGGCA GAGGAGATGC ATGATGAATG ATGCATGCTG CATGGAACGG
TTAGGATTCA AGAGATCCAT GTGGGTTCTG TACCACATAA AATCCAAGCC ATTCCATTAC CAAACATTAC TTCTCTACGC
AAGATTGTTT TTTTTTTTAA TTTTTCTCAC TGCCAAACTA AAACGTTTCT TTCAATTTTG GATTTTGGCC ATGTCTTTGT
CAAGTTAGAC ATGATCAGTA CCTAGTCATT AATTGTGTGC CACATTATCT TCGAACTTTT CCATGGCTGA GAACTCACTC
TGGTTATGCT TATATACATG TAAATGCAAG TTAATGCAGA TTTTGAAATT TTAGTTTTGG ACATCACTAC CAAAGATTTA
TCTGCTTCTT GTCCTACCAT GAAAAGCCTC TGCCTTGGGC CGTTCCTTGC TGTTAGTGAC CCAGTTAGTT CAAGAGCCTT
TGGAGGCCAT ATAACCAGAA AGTGCTTCCC CAAGCAAGTT CATTTCCACT CCCGTTCTTT TGTTTTCTCT TCAATCTTAT
GTTCTGCAAC TCTATCAGTA TTGCCAGAAT TAGAAGAGAA GCAGATATTT GATGGAGAGA AGGCTAATTT GCTTGTTAGA
GATCTCAGAA AGTGCTTTGA TTCAGGCAGG ACAAAGAGTT ATGAATGGAG GGTTTCCCAG TTGGAGGCCA TTATTAAGAT
GTTAAAAGAG AAAGAAAAGG AAATTACTGA AGCTCTATAT AAGGATCTTG CTAAACCTCA ACTTGAAGCA TTTATATCTG
AGGTTTCCCA GGCAAAATCC TCATGCAGTG AAGCACTTAA GGAGCTGAAA CAATGGATGA AGCCTGAGAG GGTGAGTACT
TCAATCACGA CATTTCCATC ATCAGCAGAG ATTGTGCCAG AACCGCTGGG GGTTGTGTTG GTTATCTCAA CATGGAACTT
TCCTTTCTTG TTATCAATGG ATCCGGTTAT TGGAGCCATT TCTGCGGGTA ATGCAGTGGT CCTTAAACCA TCAGAAATTG
CTCCAGCAAC ATCATCACTT CTTGCAAATT TGGTCGAACA ATATTTAGAC AACTCTGCCA TCAGAGTTGT TGAAGGAGCT
GTTCCTGAAA CAACTGCACT CCTGGAGCAG AAATGGGATA AGATACTTTA TACAGGTAGT GCTAGAGTGG GTCGGATTGT
CCTGGCTGCG GCTGCAAAGC ATCTTACACC AGTGATTCTA GAACTTGGAG GAAAGTGCCC TGCTGTTGTT GAATCAGATG
TCAACTTACA AGTTACTGCT AGGAGGATAA TAGCTGGCAA GTGGGCATGC AACAGTGGGC AAGCATGCAT TGCTGTTGAT
TATGTCATCA CAAGAAAAGA GTTTGCTCCA AAGCTGATAA GTGCCTTAAA AGAAGAATTG GAACAATTTT TTGGTAAAGA
TCCATTGGAA TCAAAAGACA TGTCACGGAT TGTGTCTTCT AACCAGTTTG CGCGGCTTGT GAAACTCTTG GATGAGGATA
AGGTATCTGA CAAAATTGTT TTAGGAGGTC AGAGGGATGA GAAGAAATTA AAAATTTCCC CAACTATCAT ATTAGGTGTT
CCTGAAGATG CTTTGGTAAT GCAGGAGGAG ATATTTGGGC CAATATTGCC AATCATCACA GTAGACAACA TAGAAGATTG
CTACAGTATA ATCAAATCAA GGCCAAAACC TCTTGCTGCA TATCTCTTCA CAAACAATGA GCAGCTGAAG AAGGATTATG
TGGATAAGAT ATCGTCAGGA GGGATACTCA TCAATGACGC TGTCATCCAT GTTGCAACTC GTGGTTTGCC TTTTGGAGGA
GTTGAAGAGA GTGGAATGGG TTGTTACCAT GGAAAATTCT CTTTTGATAG TTTCAGTCAT AGGAAGTCAG TTCTCTATAG
AAGTTTTGGT GCAGATTCAT CCATAAGGTA CCCCCCATAC ACACCTGAGA AGGAAAAATT ATTGAAGGCC ATTATCAGTG
GCAATATTGT TCAAATAATT CTTGCTCTTT TTGGATGGTC TTAAGGAGAA GGAATGATAG GGTTCCTTTA AAAATGTTCA
TGAATTAGGA AGTCCTAAAA TAATGTGTTT GGGAGCAGTA ACTTGTGGCT TCCAATTTGG TAAAAGTGGC AAAATTAAAT
TACAATTTTT CCCCACAAGT TTTCAATCTC ATGAATTTGT TCTTTGATTG CCATTAAATT ATTGATTGAG ATATCAAACA
TAATGTGCCT GCTTTGATAG AAAAGGGTGT GGCAACACAG CATAACATGA ATGCAACTTT TGTTTTTTGT TTTTCTGTCA
CCAAAATTGG AGTGTCAGTG ATCATATCAG GTATTACTGT TAAAAGTAAG TTGAAAACTT CAAGTAAAGG TTGGATAC

>Vigan.01G069200.01
ATGCAAGTTA ATGCAGATTT TGAAATTTTA GTTTTGGACA TCACTACCAA AGATTTATCT GCTTCTTGTC CTACCATGAA
AAGCCTCTGC CTTGGGCCGT TCCTTGCTGT TAGTGACCCA GTTAGTTCAA GAGCCTTTGG AGGCCATATA ACCAGAAAGT
GCTTCCCCAA GCAAGTTCAT TTCCACTCCC GTTCTTTTGT TTTCTCTTCA ATCTTATGTT CTGCAACTCT ATCAGTATTG
CCAGAATTAG AAGAGAAGCA GATATTTGAT GGAGAGAAGG CTAATTTGCT TGTTAGAGAT CTCAGAAAGT GCTTTGATTC
AGGCAGGACA AAGAGTTATG AATGGAGGGT TTCCCAGTTG GAGGCCATTA TTAAGATGTT AAAAGAGAAA GAAAAGGAAA
TTACTGAAGC TCTATATAAG GATCTTGCTA AACCTCAACT TGAAGCATTT ATATCTGAGG TTTCCCAGGC AAAATCCTCA
TGCAGTGAAG CACTTAAGGA GCTGAAACAA TGGATGAAGC CTGAGAGGGT GAGTACTTCA ATCACGACAT TTCCATCATC
AGCAGAGATT GTGCCAGAAC CGCTGGGGGT TGTGTTGGTT ATCTCAACAT GGAACTTTCC TTTCTTGTTA TCAATGGATC
CGGTTATTGG AGCCATTTCT GCGGGTAATG CAGTGGTCCT TAAACCATCA GAAATTGCTC CAGCAACATC ATCACTTCTT
GCAAATTTGG TCGAACAATA TTTAGACAAC TCTGCCATCA GAGTTGTTGA AGGAGCTGTT CCTGAAACAA CTGCACTCCT
GGAGCAGAAA TGGGATAAGA TACTTTATAC AGGTAGTGCT AGAGTGGGTC GGATTGTCCT GGCTGCGGCT GCAAAGCATC
TTACACCAGT GATTCTAGAA CTTGGAGGAA AGTGCCCTGC TGTTGTTGAA TCAGATGTCA ACTTACAAGT TACTGCTAGG
AGGATAATAG CTGGCAAGTG GGCATGCAAC AGTGGGCAAG CATGCATTGC TGTTGATTAT GTCATCACAA GAAAAGAGTT
TGCTCCAAAG CTGATAAGTG CCTTAAAAGA AGAATTGGAA CAATTTTTTG GTAAAGATCC ATTGGAATCA AAAGACATGT
CACGGATTGT GTCTTCTAAC CAGTTTGCGC GGCTTGTGAA ACTCTTGGAT GAGGATAAGG TATCTGACAA AATTGTTTTA
GGAGGTCAGA GGGATGAGAA GAAATTAAAA ATTTCCCCAA CTATCATATT AGGTGTTCCT GAAGATGCTT TGGTAATGCA
GGAGGAGATA TTTGGGCCAA TATTGCCAAT CATCACAGTA GACAACATAG AAGATTGCTA CAGTATAATC AAATCAAGGC
CAAAACCTCT TGCTGCATAT CTCTTCACAA ACAATGAGCA GCTGAAGAAG GATTATGTGG ATAAGATATC GTCAGGAGGG
ATACTCATCA ATGACGCTGT CATCCATGTT GCAACTCGTG GTTTGCCTTT TGGAGGAGTT GAAGAGAGTG GAATGGGTTG
TTACCATGGA AAATTCTCTT TTGATAGTTT CAGTCATAGG AAGTCAGTTC TCTATAGAAG TTTTGGTGCA GATTCATCCA
TAAGGTACCC CCCATACACA CCTGAGAAGG AAAAATTATT GAAGGCCATT ATCAGTGGCA ATATTGTTCA AATAATTCTT
GCTCTTTTTG GATGGTCTTA A

>Vigan.01G069200.01
MQVNADFEIL VLDITTKDLS ASCPTMKSLC LGPFLAVSDP VSSRAFGGHI TRKCFPKQVH FHSRSFVFSS ILCSATLSVL
PELEEKQIFD GEKANLLVRD LRKCFDSGRT KSYEWRVSQL EAIIKMLKEK EKEITEALYK DLAKPQLEAF ISEVSQAKSS
CSEALKELKQ WMKPERVSTS ITTFPSSAEI VPEPLGVVLV ISTWNFPFLL SMDPVIGAIS AGNAVVLKPS EIAPATSSLL
ANLVEQYLDN SAIRVVEGAV PETTALLEQK WDKILYTGSA RVGRIVLAAA AKHLTPVILE LGGKCPAVVE SDVNLQVTAR
RIIAGKWACN SGQACIAVDY VITRKEFAPK LISALKEELE QFFGKDPLES KDMSRIVSSN QFARLVKLLD EDKVSDKIVL
GGQRDEKKLK ISPTIILGVP EDALVMQEEI FGPILPIITV DNIEDCYSII KSRPKPLAAY LFTNNEQLKK DYVDKISSGG
ILINDAVIHV ATRGLPFGGV EESGMGCYHG KFSFDSFSHR KSVLYRSFGA DSSIRYPPYT PEKEKLLKAI ISGNIVQIIL
ALFGWS*