GBrowse Details

Vigan.01G071700.01

Basic Information:
Name: Vigan.01G071700.01
Multiple alignment
Variant Information
Position: Chr01:5719550..5722358 (+ strand)
Length: 2809
Functional Information:
Description: Similar to Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial. [P52424, Vigna unguiculata]
GO: Biological Process: 'de novo' IMP biosynthetic process (GO:0006189)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641)
InterPro: AIR synthase related protein, N-terminal domain (IPR000728)
Phosphoribosylformylglycinamidine cyclo-ligase (IPR004733)
AIR synthase-related protein, C-terminal domain (IPR010918)
PurM, N-terminal-like (IPR016188)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:504.47,171.90,41.62,40.53,362.01,79.84,109.64,21.47
Arabidopsis thaliana homolog: AT3G55010.1
Automatic updates:
Name: NM_001376046 NCBI(nuccore)
Organism: Vigna unguiculata
Description: Vigna unguiculata phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial (PUR5), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 9520274 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:5719550..5719925 (+ strand)
Length: 376
Type: five_prime_UTR
Position: Chr01:5719926..5720229 (+ strand)
Length: 304
Type: CDS
Position: Chr01:5720311..5720405 (+ strand)
Length: 95
Type: CDS
Position: Chr01:5720497..5720598 (+ strand)
Length: 102
Type: CDS
Position: Chr01:5720685..5720744 (+ strand)
Length: 60
Type: CDS
Position: Chr01:5721245..5721417 (+ strand)
Length: 173
Type: CDS
Position: Chr01:5721497..5721599 (+ strand)
Length: 103
Type: CDS
Position: Chr01:5721692..5721850 (+ strand)
Length: 159
Type: CDS
Position: Chr01:5721946..5722116 (+ strand)
Length: 171
Type: CDS
Position: Chr01:5722117..5722358 (+ strand)
Length: 242
Type: three_prime_UTR


>Vigan.01G071700.01
GTCATCATGA CATAGCCATA CTTTGAAGTT TACGATCATC CAATGCAAAC ATAAAAGTTA TCTATCAAAC TACATTGTCA
CTTCATTATT TTAATTTTAC ATTATCTTAA TCTAATACGA GCTTATCCTT TCATCAACCA AAACGACGTT GTTTCAATTA
TTCTATTAGG CACACACCCA CGACAAAAAT CTCTTCCCCA CTATAAACCC ATACATTAGG GCGCGCTTTT ACCGGGCCTC
TCTCGCCACC GCATCTCCAC CGCGTCTCCG CCGCAGTTCC GTCCATCTCT GCCACCGCAG CTCCGTCCAT CTCTGCCACC
GCTTCTGCTT ATCTCACTCG CTCTTTGTTT CTATAATTCT TCTACCGATC TCAACAATGA GTCTTTCAGC ATGGGCAGAG
CTATCACGTT GTTTCGCCGC CGCAGCATCC GCGAAACCTA ATTCCGGCAA GTCCAACCCC ACAGCCGCAA CAAGCCTCGT
TATAAACAGT CCAATAGGTC GTGACGGTGC CGTTTTGTCA GTTTCTCGGT CGAGGAAGAC CAGCAGAATA GTCGTGGAAG
CTAGTCAAGG TCTTACTTAT AGGGACGCCG GCGTGGACAT CGATGCCGGT GCCGAACTCG TGCGTAGGAT AGCGAAGATG
GCGCCAGGGA TTGGAGGCTT CGGCGGTTTA TACCCTCTCG GTGATTCGTA CCTCGTTGCC GGAACCGACG GCGTGGGAAC
GAAGCTGATG CTTGCGTTCG AAACTGGAAT TCACGATACT ATTGGGATTG ATCTGGTTGC GATGAGTGTG AATGACATTG
TGACTTCGGG GGCGAAGCCT TTGTTTTTCC TTGATTACTT TGCAACTGGC CGCCTTGACG TGGACGTGGC GGAAAAGGTT
GTAAAAGGCA TTGTTGATGG TTGTAAGCAA TCTGATTGCG TTCTTTTAGG AGGAGAGACT GCAGAGATGC CTGGTCTCTA
TAAAGAAGGT GAGTATGATC TTAGTGGCTG TGCAGTTGGA ATTGTGAAGA AAGATTCTGT AATTAATGGG AAAAATATAG
TTGCCGGTGA CGTTATTATT GGTCTACCAT CGAGTGGAGT TCACTCTAAT GGTTTCTCAC TTGTAAGAAG AGTACTTGCT
CAAAGTGGTC TTTCACTGAA AGATCAGCTT CCTGGTAGCA ATATTACAAT TGCAGAGGCT TTGATGGCCC CAACTGTGAT
CTATGTCAAA CAGGTACTGG ATTTAATTAG CAAGGGAGGG GTGAAGGGAA TTGCCCACAT CACTGGTGGC GGTTTCACAG
ATAACATACC CCGAGTTTTT CCGGAAGGCC TCGGAGCATT AATATACGAC GGCTCGTGGG AAGTGCCTGC AGTGTTTAAG
TGGCTTCAGG AGGCTGGGAA GATAGAAGAC TCCGAGATGA GACGGACTTT TAATATGGGC ATAGGGATGA TCCTGGTGGT
TAGTCCAGAG GCAGCTAACA GAATACTCGA GAACAGAGGC CAAACAGACA AATTCTACCG CATTGGTGAA ATTATAAGCG
GCAACGGAGT CACCTTCAGC TAATTTTTTT AGTTGAGTTT ATTTAACGTT GTAATTTTAA TACTTTAATA TAAAGTTCCT
CTCAGGATGG GATTTGAACT CTTGGTTTAC TTGGAGCCTA ATAAATTTCC AAACATAAAT GTTACAACAT TTGACAACAA
TTTTGCGGAT GTTAAGTTGC TGTTGAAAAG TGTTTACGCT TATCTTCATT TGACAACAAT TTTGCGGATG TTAAGTTGCT
GTTGAAAAGT GTTTACGCTT ATCTT

>Vigan.01G071700.01
ATGAGTCTTT CAGCATGGGC AGAGCTATCA CGTTGTTTCG CCGCCGCAGC ATCCGCGAAA CCTAATTCCG GCAAGTCCAA
CCCCACAGCC GCAACAAGCC TCGTTATAAA CAGTCCAATA GGTCGTGACG GTGCCGTTTT GTCAGTTTCT CGGTCGAGGA
AGACCAGCAG AATAGTCGTG GAAGCTAGTC AAGGTCTTAC TTATAGGGAC GCCGGCGTGG ACATCGATGC CGGTGCCGAA
CTCGTGCGTA GGATAGCGAA GATGGCGCCA GGGATTGGAG GCTTCGGCGG TTTATACCCT CTCGGTGATT CGTACCTCGT
TGCCGGAACC GACGGCGTGG GAACGAAGCT GATGCTTGCG TTCGAAACTG GAATTCACGA TACTATTGGG ATTGATCTGG
TTGCGATGAG TGTGAATGAC ATTGTGACTT CGGGGGCGAA GCCTTTGTTT TTCCTTGATT ACTTTGCAAC TGGCCGCCTT
GACGTGGACG TGGCGGAAAA GGTTGTAAAA GGCATTGTTG ATGGTTGTAA GCAATCTGAT TGCGTTCTTT TAGGAGGAGA
GACTGCAGAG ATGCCTGGTC TCTATAAAGA AGGTGAGTAT GATCTTAGTG GCTGTGCAGT TGGAATTGTG AAGAAAGATT
CTGTAATTAA TGGGAAAAAT ATAGTTGCCG GTGACGTTAT TATTGGTCTA CCATCGAGTG GAGTTCACTC TAATGGTTTC
TCACTTGTAA GAAGAGTACT TGCTCAAAGT GGTCTTTCAC TGAAAGATCA GCTTCCTGGT AGCAATATTA CAATTGCAGA
GGCTTTGATG GCCCCAACTG TGATCTATGT CAAACAGGTA CTGGATTTAA TTAGCAAGGG AGGGGTGAAG GGAATTGCCC
ACATCACTGG TGGCGGTTTC ACAGATAACA TACCCCGAGT TTTTCCGGAA GGCCTCGGAG CATTAATATA CGACGGCTCG
TGGGAAGTGC CTGCAGTGTT TAAGTGGCTT CAGGAGGCTG GGAAGATAGA AGACTCCGAG ATGAGACGGA CTTTTAATAT
GGGCATAGGG ATGATCCTGG TGGTTAGTCC AGAGGCAGCT AACAGAATAC TCGAGAACAG AGGCCAAACA GACAAATTCT
ACCGCATTGG TGAAATTATA AGCGGCAACG GAGTCACCTT CAGCTAA

>Vigan.01G071700.01
MSLSAWAELS RCFAAAASAK PNSGKSNPTA ATSLVINSPI GRDGAVLSVS RSRKTSRIVV EASQGLTYRD AGVDIDAGAE
LVRRIAKMAP GIGGFGGLYP LGDSYLVAGT DGVGTKLMLA FETGIHDTIG IDLVAMSVND IVTSGAKPLF FLDYFATGRL
DVDVAEKVVK GIVDGCKQSD CVLLGGETAE MPGLYKEGEY DLSGCAVGIV KKDSVINGKN IVAGDVIIGL PSSGVHSNGF
SLVRRVLAQS GLSLKDQLPG SNITIAEALM APTVIYVKQV LDLISKGGVK GIAHITGGGF TDNIPRVFPE GLGALIYDGS
WEVPAVFKWL QEAGKIEDSE MRRTFNMGIG MILVVSPEAA NRILENRGQT DKFYRIGEII SGNGVTFS*