GBrowse Details

Vigan.01G072600.01

Basic Information:
Name: Vigan.01G072600.01
Multiple alignment
Variant Information
Position: Chr01:5796562..5799502 (- strand)
Length: 2941
Functional Information:
Description: Similar to Os12g0189700 protein. [Q2QWN1, Oryza sativa subsp. japonica]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.71,2.03,2.40,16.47,1.90,7.56,2.02,2.25
Automatic updates:
Name: NM_001250345 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500132 (LOC100500132), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:5796562..5796765 (- strand)
Length: 204
Type: three_prime_UTR
Position: Chr01:5796766..5797173 (- strand)
Length: 408
Type: CDS
Position: Chr01:5799006..5799446 (- strand)
Length: 441
Type: CDS
Position: Chr01:5799447..5799502 (- strand)
Length: 56
Type: five_prime_UTR


>Vigan.01G072600.01
ATCGTTTCTT AACCATTGAA TATTTATTTG ATAAGGAGTC CAAAATATCT GATCTCATGC GCATAATTCA CTTCAGTTAT
GGTTTCAGAG ATTCCTTATT TTGGTTCCTA ACTCAAAAAA CAACTATGGC GGGTGCATGC AGCAGAGCAC CCATTTCCCA
TCTTCCTCTG CGGAACCCCA AAACCAGAAT CTATAATTCT CAGAGCAGAG TTCTTCAACA TCCAAATAGG CGTTTGTTCC
TCTTCTCTCT GCCCCTGTCT AGTTTCGTTC TCCTTCCCGT TCCCAGCTTT GGTGATGGTA ACGGTGCAAT TGATAAATTT
CAACATGGGT CTTCTTCCTC ATACGCTGCC ACAATGTATG ACCCTCTAAG TGCTGCTGAA AGAGAAGCAA GTGCTTTAGT
TTCACAGAGA GTCTCTCAAG CAGTGGATTT GTTGGAGAAA GGGAGGGAAT TGCAGGCTCA GGGAGACTTT GCTGCTGCTC
TTGGTTACTT TTCTCAGGTT GTTGAAAGCT ACAAAGACTT GGCATTCTCA GAGTATGCAA GGGTAGGAAG GGCATTGGCC
CTGTATGAAG TTGGTGACAG AGAAGAAGCA ATTGCAGAGA TGGAGGACGT TTCAATATCC CTAAAAGGAT ATCCAGGTAT
ATTCGTAGAA TTTTTGCACT TCATGGTCAC GCTACAAATG GAAAACTCTC ACTTTTCTCT AATCCAACAT CCCTCTGCAG
AAATACATGC AGCTCTTGCG GCAGCCTTAT ATGCAGATAA ACACGCCGCA TTGCTTGCTG AAAACCAGTT TGCCATTGCA
ACTCTTCTTG ATCCCCATTT TACAGACATT TCATATGTTA GAGACACAAA GCACTGGCCT CCAAGTTTGA TCAGTTCTCT
GCAGAACTTC ATCACACTGT CTTAAGACCT CACAATATTG ATACGTTTTG GTTAACCCAT ACTAAGCGCC AACTATATAA
AAGCAAAAAG TTGAAGCCGA CTAATAATTT TGATTAGGGT GTTCATATCT TGTAATTAAT GATATATATC ACTTTAGTAA
CCAAATTGTC ATTTGAGTGA TATATATTAA TATCAAAATA TTGTTACAAG TAAAGCTTTA TATTCTTCG

>Vigan.01G072600.01
ATGCGCATAA TTCACTTCAG TTATGGTTTC AGAGATTCCT TATTTTGGTT CCTAACTCAA AAAACAACTA TGGCGGGTGC
ATGCAGCAGA GCACCCATTT CCCATCTTCC TCTGCGGAAC CCCAAAACCA GAATCTATAA TTCTCAGAGC AGAGTTCTTC
AACATCCAAA TAGGCGTTTG TTCCTCTTCT CTCTGCCCCT GTCTAGTTTC GTTCTCCTTC CCGTTCCCAG CTTTGGTGAT
GGTAACGGTG CAATTGATAA ATTTCAACAT GGGTCTTCTT CCTCATACGC TGCCACAATG TATGACCCTC TAAGTGCTGC
TGAAAGAGAA GCAAGTGCTT TAGTTTCACA GAGAGTCTCT CAAGCAGTGG ATTTGTTGGA GAAAGGGAGG GAATTGCAGG
CTCAGGGAGA CTTTGCTGCT GCTCTTGGTT ACTTTTCTCA GGTTGTTGAA AGCTACAAAG ACTTGGCATT CTCAGAGTAT
GCAAGGGTAG GAAGGGCATT GGCCCTGTAT GAAGTTGGTG ACAGAGAAGA AGCAATTGCA GAGATGGAGG ACGTTTCAAT
ATCCCTAAAA GGATATCCAG GTATATTCGT AGAATTTTTG CACTTCATGG TCACGCTACA AATGGAAAAC TCTCACTTTT
CTCTAATCCA ACATCCCTCT GCAGAAATAC ATGCAGCTCT TGCGGCAGCC TTATATGCAG ATAAACACGC CGCATTGCTT
GCTGAAAACC AGTTTGCCAT TGCAACTCTT CTTGATCCCC ATTTTACAGA CATTTCATAT GTTAGAGACA CAAAGCACTG
GCCTCCAAGT TTGATCAGTT CTCTGCAGAA CTTCATCACA CTGTCTTAA

>Vigan.01G072600.01
MRIIHFSYGF RDSLFWFLTQ KTTMAGACSR APISHLPLRN PKTRIYNSQS RVLQHPNRRL FLFSLPLSSF VLLPVPSFGD
GNGAIDKFQH GSSSSYAATM YDPLSAAERE ASALVSQRVS QAVDLLEKGR ELQAQGDFAA ALGYFSQVVE SYKDLAFSEY
ARVGRALALY EVGDREEAIA EMEDVSISLK GYPGIFVEFL HFMVTLQMEN SHFSLIQHPS AEIHAALAAA LYADKHAALL
AENQFAIATL LDPHFTDISY VRDTKHWPPS LISSLQNFIT LS*