VIGGS:GBrowse

Vigan.01G072700.01

Basic Information:

Name:	Vigan.01G072700.01 Multiple alignment Variant Information
Position:	Chr01:5800019..5803298 (- strand)
Length:	3280

Functional Information:

Description:	Similar to RAB1Y. [Q40207, Lotus japonicus]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:21.10,17.08,22.13,14.19,19.30,23.79,20.19,23.25

Automatic updates:

Name:	NM_001248507 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526880 (LOC100526880), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:5800019..5800335 (- strand)
Length:	317
Type:	three_prime_UTR

Position:	Chr01:5800336..5800443 (- strand)
Length:	108
Type:	CDS

Position:	Chr01:5800823..5800951 (- strand)
Length:	129
Type:	CDS

Position:	Chr01:5802181..5802302 (- strand)
Length:	122
Type:	CDS

Position:	Chr01:5802590..5802655 (- strand)
Length:	66
Type:	CDS

Position:	Chr01:5802882..5802950 (- strand)
Length:	69
Type:	CDS

Position:	Chr01:5803040..5803175 (- strand)
Length:	136
Type:	CDS

Position:	Chr01:5803176..5803298 (- strand)
Length:	123
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G072700.01
TTACAAATGA GAAATTCCTC GTTACATTTT TTTTTATTCA TCATGAACTG AAATAAATTG ATATTCTTAT TCTGTCGGCG
ATGAAGGGTT TTTTGATGCG TGTGATTGAT TCAGTTAAAT GCGATGGATT TGAGTTCGGG GCCTCAAGAA TTTGATTATT
TGTTCAAGTT GTTGATGATC GGAGACTCTG GGGTTGGCAA GAGTAGTCTT CTTCTCAGTT TCACCACTGA GGCTTTTGAA
GATCTTTCAC CCACAATTGG TGTTGATTTT AAGGTCAAAT ATGTGACGAT GGGGGGTAAA AAGCTTAAGC TTGCAATTTG
GGACACTGCT GGTCAGGAGA GATTCAGAAC ACTGACAAGT TCTTACTACC GAGGGGCACA AGGAATCATC ATGGTTTATG
ATGTAACCCG GCGAGATACA TTTACAAATC TTTCTGATAT ATGGGCAAAG GAAATAGACC TTTATTCAAC AAATCCAGAT
TGCATCAAGA TGCTTGTTGG AAACAAAGTC GACAAGGAGG GTGATAGAGT TGTGACAAAG AAAGAGGGAA TAGACTTCGC
CAGGGAATAT GGTTGCCTAT TTATTGAATG CAGTGCTAAA ACTCGAGTTA ATGTTCAGCA ATGCTTTGAA GAGCTTGTTT
TGAAGATTCT CGATACACCT AGCCTTTTAG CTGATGGCTC AAAGGGCGTA CGAAAAAACA TTTTTAAGGA CAGGCCACCC
CAATCTGATG CATCTACAAG TAGTTGTTGC TGATTTGAAG AAGCTATTTC ACTAAAAAAC CTACATTTTA AGAATGAGGA
TCTCAAAGAG AAGGGCTCTG CATCCATTTT AAGAATCTGA ACATACTTTG CTGGTTGTCT AGGATCATAG GAAGCCATTT
TTTTAAATTT CTTTTTTATT TTATTTTCAG GTTCCTGTTT TGTCTTGAAT ATTCGATGTA ACCTAATGAT GATGGTTGGT
TGTCTGCAAT TTTATTTTCT TTGTGGATTT CTTGTTTGTC TGAGCGATAT TTAATCTCAT ATAGACGTTG AAATTTATAA
AAGGGTCGTA GATCTGATAA TTTTTATAAA

[show][hide][copy]CDS

>Vigan.01G072700.01
ATGGATTTGA GTTCGGGGCC TCAAGAATTT GATTATTTGT TCAAGTTGTT GATGATCGGA GACTCTGGGG TTGGCAAGAG
TAGTCTTCTT CTCAGTTTCA CCACTGAGGC TTTTGAAGAT CTTTCACCCA CAATTGGTGT TGATTTTAAG GTCAAATATG
TGACGATGGG GGGTAAAAAG CTTAAGCTTG CAATTTGGGA CACTGCTGGT CAGGAGAGAT TCAGAACACT GACAAGTTCT
TACTACCGAG GGGCACAAGG AATCATCATG GTTTATGATG TAACCCGGCG AGATACATTT ACAAATCTTT CTGATATATG
GGCAAAGGAA ATAGACCTTT ATTCAACAAA TCCAGATTGC ATCAAGATGC TTGTTGGAAA CAAAGTCGAC AAGGAGGGTG
ATAGAGTTGT GACAAAGAAA GAGGGAATAG ACTTCGCCAG GGAATATGGT TGCCTATTTA TTGAATGCAG TGCTAAAACT
CGAGTTAATG TTCAGCAATG CTTTGAAGAG CTTGTTTTGA AGATTCTCGA TACACCTAGC CTTTTAGCTG ATGGCTCAAA
GGGCGTACGA AAAAACATTT TTAAGGACAG GCCACCCCAA TCTGATGCAT CTACAAGTAG TTGTTGCTGA

[show][hide][copy]PROTEIN

>Vigan.01G072700.01
MDLSSGPQEF DYLFKLLMIG DSGVGKSSLL LSFTTEAFED LSPTIGVDFK VKYVTMGGKK LKLAIWDTAG QERFRTLTSS
YYRGAQGIIM VYDVTRRDTF TNLSDIWAKE IDLYSTNPDC IKMLVGNKVD KEGDRVVTKK EGIDFAREYG CLFIECSAKT
RVNVQQCFEE LVLKILDTPS LLADGSKGVR KNIFKDRPPQ SDASTSSCC*