GBrowse Details

Vigan.01G072900.01

Basic Information:
Name: Vigan.01G072900.01
Multiple alignment
Variant Information
Position: Chr01:5824954..5826396 (- strand)
Length: 1443
Functional Information:
Description: Similar to Uncharacterized protein. [I1M7V9, Glycine max]
GO: Biological Process: ribosome biogenesis (GO:0042254)
Cellular Component: intracellular (GO:0005622)
InterPro: Ribosomal protein L10/acidic P0 (IPR001790)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.03,20.67,12.55,7.74,16.23,37.80,12.36,10.30
Automatic updates:
Name: NM_001249135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305996 (LOC100305996), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:5824954..5825202 (- strand)
Length: 249
Type: three_prime_UTR
Position: Chr01:5825203..5825454 (- strand)
Length: 252
Type: CDS
Position: Chr01:5825599..5825667 (- strand)
Length: 69
Type: CDS
Position: Chr01:5825795..5826040 (- strand)
Length: 246
Type: CDS
Position: Chr01:5826041..5826396 (- strand)
Length: 356
Type: five_prime_UTR


>Vigan.01G072900.01
TTTGAAGATT ATAAACTTTA TAGGGGTGCT GGAAGAAAAA TATGGGGTGG AGGAAGAGGC CGCCTAAACT TTTAGGTTAG
AAAAAAATTC CAGCCCATTA AAGAAAACCC TAGAGCTGTC ACCCATCACC CCTCACGAAG AGACTCGTAG AGAGGTCAGG
GTCGAGGCCA CCACCGCCGG GTACGTTGAT GTAGCGAGAG TTTCCGGTAA TAGAGACGCC GCCGAGAGAG GTGCTGCCGT
CGTGAGGTTT GTCCGCTTGT TCTCCCTCAC CACTGAGAGG GATTGAATCG CAAGGCCGCG AGAGAAGCAC CGCCGCGAGC
CCACTCGTTT TTCTATAGCT ACAGTGATCA ACAACAATGG CGGGGAAACT GGCAAAGGCA GCTTATGATG CAAAGATGTT
GAAGCTTCTG AGAGAGTACA GTCAGGTGCT GGTGGTTTCA TCTGACAATG TGGGTTCAAA TCAGCTTCAG GGCATACGAA
GGGGACTCCA TGCTGATTCA GTTGTGGTGA TGGGAAAGAA CTCCCTGATG AAACGCTCTA TCATCTTGGA TGCTCAGAAG
ACTGGCAACA AGGCCTTCCT TAACCTTGTC CCCCTTCTTG TGGGAAATGT GGCATTAATT TTCACCAAAG GCGACATAAG
GGAGGTCAGC GAACAGATTG CCAAGTACAA GGTTGTTCAA CCTATTCTAA TGTGTCCCAA GTATATGTCA CATGACACAT
ACCAGAATTG TTCCTATATG CAATCCGGGC AGTTACCTTT GGGCCTTACA TGTTGTAATC AGCAGCAGTC TTCGCAGGTT
TCTGAGCCTT TTCTTGTATG CTCAAAATTC CAGCCACACC AACATTGTTT CATGATGAGA TCAAGGCAGT TCTTGATGAC
AAGTATATGG TCTCCTTTTC TCCTTTTGGC TGGCAACTTG TGACATCGAA GTATTTTGAT TAGGATCACA TGGTTTGTAT
TACTCCTTCC TTTTTGTGCT GTTGGCTTTC AAACTCTATT TAGTTCTCCC CTTTCAGGGG ATGATGGAAA ATGAAATGAT
TTTGATCAGG GTTTCAATTT GATCACTGAC ATTTCTGTAC AAGTAGATTT TTAGTTCACC CAGAAATTTT ATCTTCTTTT
TGAATAAGAA TATGACAACA TATTTGTTAT CTAATTTATC TACTAAGTAC AG

>Vigan.01G072900.01
ATGGCGGGGA AACTGGCAAA GGCAGCTTAT GATGCAAAGA TGTTGAAGCT TCTGAGAGAG TACAGTCAGG TGCTGGTGGT
TTCATCTGAC AATGTGGGTT CAAATCAGCT TCAGGGCATA CGAAGGGGAC TCCATGCTGA TTCAGTTGTG GTGATGGGAA
AGAACTCCCT GATGAAACGC TCTATCATCT TGGATGCTCA GAAGACTGGC AACAAGGCCT TCCTTAACCT TGTCCCCCTT
CTTGTGGGAA ATGTGGCATT AATTTTCACC AAAGGCGACA TAAGGGAGGT CAGCGAACAG ATTGCCAAGT ACAAGGTTGT
TCAACCTATT CTAATGTGTC CCAAGTATAT GTCACATGAC ACATACCAGA ATTGTTCCTA TATGCAATCC GGGCAGTTAC
CTTTGGGCCT TACATGTTGT AATCAGCAGC AGTCTTCGCA GGTTTCTGAG CCTTTTCTTG TATGCTCAAA ATTCCAGCCA
CACCAACATT GTTTCATGAT GAGATCAAGG CAGTTCTTGA TGACAAGTAT ATGGTCTCCT TTTCTCCTTT TGGCTGGCAA
CTTGTGA

>Vigan.01G072900.01
MAGKLAKAAY DAKMLKLLRE YSQVLVVSSD NVGSNQLQGI RRGLHADSVV VMGKNSLMKR SIILDAQKTG NKAFLNLVPL
LVGNVALIFT KGDIREVSEQ IAKYKVVQPI LMCPKYMSHD TYQNCSYMQS GQLPLGLTCC NQQQSSQVSE PFLVCSKFQP
HQHCFMMRSR QFLMTSIWSP FLLLAGNL*