VIGGS:GBrowse

Vigan.01G076300.01

Basic Information:

Name:	Vigan.01G076300.01 Multiple alignment Variant Information
Position:	Chr01:6139086..6141794 (+ strand)
Length:	2709

Functional Information:

Description:	Similar to uncharacterized bolA-like protein C8C9.11-like. [XP_004503975.1, Cicer arietinum]
InterPro:	BolA protein (IPR002634)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:43.55,58.24,41.64,50.62,46.48,76.71,63.25,42.47
Arabidopsis thaliana homolog:	AT5G09830.1

Automatic updates:

Name:	NM_001250196 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500634 (LOC100500634), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:6139086..6139206 (+ strand)
Length:	121
Type:	five_prime_UTR

Position:	Chr01:6139207..6139269 (+ strand)
Length:	63
Type:	CDS

Position:	Chr01:6141198..6141220 (+ strand)
Length:	23
Type:	CDS

Position:	Chr01:6141327..6141522 (+ strand)
Length:	196
Type:	CDS

Position:	Chr01:6141523..6141794 (+ strand)
Length:	272
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G076300.01
AAAAAATTAA TACTTTAATC ACTGCTTTCA TTTTATAAGC GTACTGAGAA CGCAAGAAGA GAAGCGATAT ATATATATAT
ATATATATTG ATTCCTTGAA GGAGAAAGTG AAAGAAGAGA GATGGGTGTG ACGAAGGAAA ACGTTGAAGC ATCCTTGAAG
GCCAAACTCA ACCCTTCTCA TCTTGAAGTG GTTGATACAT CTGGAGGGTG CGGCGCTAGT TTTGTAGTGG AGATTGTATC
AGAACAATTT GAAGGAAAAA GGCTACTGGA GAGGCATCGA ATGGTGAATG CTGCCTTAGA GGAGGAACTG AAAGAGATTC
ATGCTCTCTC GATAAAGAAA ACTGTTACCC CAGAGCAGTG GAAACAACAG CAAGAAGCCA ACCAATCAAA TGCTGCTGCC
TAGATCATAT GTTTCGGTTA TAATCATTTA TAAATAAGAA ATCCAGTGTG TTACTGACTT TTGACAATGT TTATGGATTT
TAGCTCTCTG TACTTTTATC GACACTCAAA TTTGTAGCTG TAGTACTAAA GTCAAGTTTA CAAAATTTCT TCCTTTCCCC
TAGTTATTAA GTAACGTGAC CCTCTTTGGG TAGAAACTTT TACATCAACT ACACTTTGTT GAGCGACCCC CTTCAAGTAG
AAACTTTGAA ATCAATTGTA GTCGTAAAAC ACCCA

[show][hide][copy]CDS

>Vigan.01G076300.01
ATGGGTGTGA CGAAGGAAAA CGTTGAAGCA TCCTTGAAGG CCAAACTCAA CCCTTCTCAT CTTGAAGTGG TTGATACATC
TGGAGGGTGC GGCGCTAGTT TTGTAGTGGA GATTGTATCA GAACAATTTG AAGGAAAAAG GCTACTGGAG AGGCATCGAA
TGGTGAATGC TGCCTTAGAG GAGGAACTGA AAGAGATTCA TGCTCTCTCG ATAAAGAAAA CTGTTACCCC AGAGCAGTGG
AAACAACAGC AAGAAGCCAA CCAATCAAAT GCTGCTGCCT AG

[show][hide][copy]PROTEIN

>Vigan.01G076300.01
MGVTKENVEA SLKAKLNPSH LEVVDTSGGC GASFVVEIVS EQFEGKRLLE RHRMVNAALE EELKEIHALS IKKTVTPEQW
KQQQEANQSN AAA*