VIGGS:GBrowse

Vigan.01G076800.01

Basic Information:

Name:	Vigan.01G076800.01 Multiple alignment Variant Information
Position:	Chr01:6207334..6210780 (+ strand)
Length:	3447

Functional Information:

Description:	Similar to Cinnamyl-alcohol dehydrogenase. [F8SMC1, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: zinc ion binding (GO:0008270)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro:	Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
	Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
	GroES (chaperonin 10)-like (IPR011032)
	Alcohol dehydrogenase, C-terminal (IPR013149)
	Alcohol dehydrogenase GroES-like (IPR013154)
	NAD(P)-binding domain (IPR016040)
	Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:104.25,29.44,87.15,23.96,57.94,237.35,18.16,31.33
Arabidopsis thaliana homolog:	AT2G21730.1, AT4G39330.1

Automatic updates:

Name:	NM_001254303 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable mannitol dehydrogenase-like (LOC100795575), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254562 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable mannitol dehydrogenase-like (LOC100819684), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:6207334..6207479 (+ strand)
Length:	146
Type:	five_prime_UTR

Position:	Chr01:6207480..6207586 (+ strand)
Length:	107
Type:	CDS

Position:	Chr01:6207699..6207812 (+ strand)
Length:	114
Type:	CDS

Position:	Chr01:6208874..6209387 (+ strand)
Length:	514
Type:	CDS

Position:	Chr01:6209962..6210115 (+ strand)
Length:	154
Type:	CDS

Position:	Chr01:6210379..6210581 (+ strand)
Length:	203
Type:	CDS

Position:	Chr01:6210582..6210780 (+ strand)
Length:	199
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G076800.01
ACGAACCTCG AAAATCATTA TATATATATA TATATATATA GACTGTGTCA CTGCTCTGCA AGGTGTCACG TCACTGCGAC
GAGGGTCCAA GAGTAAAGAA GAGGGTTGAG GAAGAGCTTG AGAGTAGAAG AAAAAGAAAA GAAATCATGG CAGAATCTGC
AAAATCTCCA CAAACTGAAC TTCCTCACAG AGCTTTTGGG TGGGCTGCTA CAGACACTTC TGGGACCCTT TCGCCCTTTC
ATTTTACCAG AAGGGAAAAC GGCGTTGACG ACGTCACCGT CCAGATTCTG TTTTGCGGGG TTTGCCATTC TGATCTTCAC
ACTGTCAAAA ACGACTGGGG TTTCACCACT TACCCTGTCG TTCCAGGGCA TGAAATTGTT GGTGTTGTGA CAAAAGTTGG
AAATAATGTG AAATACTTTA AAGCGGGTGA TAAAGTGGGA GTTGGTGTTA TAGTGGAGTC TTGCAAGGAA TGTGAATGTT
GCCAACAGGA TTTAGAGAAT TACTGTCCCC GCCCTGTGTA TACCTATAAT TCTCCTTATT ATGATGGGAC ACGAACCCAA
GGTGGTTATT CTAACATTGT GGTTGTCAAC CAGCGTTATG TGCTCCGATT TCCTGACAAC TTACCCCTTG ATGCTGGTGC
TCCACTGCTG TGTGCGGGGA TAACTGTGTA TAGCCCTATG AAATATTATG GGATGACAGA GCCTGGCAAA CATCTGGGAG
TGGCAGGGCT AGGTGGGTTA GGCCATGTTG CAGTCAAAAT TGGTAAGGCC TTTGGGCTGA AAGTTACTGT CATTAGTGGA
TCTCCAAACA AGGAAGCTGA GGCAGTTGAC ACACTCGGGG CTGATTCTTT CGTTCTTTCC TCAGACCCTG CAAAAATGAA
GGCTGCTATG GGAACCATGG ACTATATCAT AGACACAATT TCTGCTGTTC ATTCGCTGAG TCCACTGCTT GGTCTGCTGA
AGCTGAATGG GAAGCTAGTT ACTGTAGGGT TGCCTAACAA GCCTCTTGAG GTGCCTATCT TCCAAATAGC CGCAGGAAGG
AAGCTTGTAG GGGGGAGCAA CTTTGGAGGG ATCAAGGAAA CCCAGGAAAT GCTTGATTTC TGCGGAAAGC ACAACATAAC
TGCAAATATC GAGCTGATTA AGATGGACCA AATCAACACT GCCATGGAAA GGCTTGGAAA AGGTGATGTG AAATATCGCT
TTGTGATTGA TGTGGCCAAC TCTTTCTCAA GTTTGTAGAA GAACATGCGC AAGCGTGTCA CCTTACATGT CTGGCACCTT
AGATTTGTCT CGGTATCTTA AGAATAATTA ACATTGGCTT TGGTATCTTA AGAATAGTTA AGATTGGCCT TGTTCCAGAA
CATCCTCTCT TCAATAATAT TACCTTTTTG GGTTTCCAAT TTATATTATG TTCCTTTATT ATCTTTATCA ATAGCAG

[show][hide][copy]CDS

>Vigan.01G076800.01
ATGGCAGAAT CTGCAAAATC TCCACAAACT GAACTTCCTC ACAGAGCTTT TGGGTGGGCT GCTACAGACA CTTCTGGGAC
CCTTTCGCCC TTTCATTTTA CCAGAAGGGA AAACGGCGTT GACGACGTCA CCGTCCAGAT TCTGTTTTGC GGGGTTTGCC
ATTCTGATCT TCACACTGTC AAAAACGACT GGGGTTTCAC CACTTACCCT GTCGTTCCAG GGCATGAAAT TGTTGGTGTT
GTGACAAAAG TTGGAAATAA TGTGAAATAC TTTAAAGCGG GTGATAAAGT GGGAGTTGGT GTTATAGTGG AGTCTTGCAA
GGAATGTGAA TGTTGCCAAC AGGATTTAGA GAATTACTGT CCCCGCCCTG TGTATACCTA TAATTCTCCT TATTATGATG
GGACACGAAC CCAAGGTGGT TATTCTAACA TTGTGGTTGT CAACCAGCGT TATGTGCTCC GATTTCCTGA CAACTTACCC
CTTGATGCTG GTGCTCCACT GCTGTGTGCG GGGATAACTG TGTATAGCCC TATGAAATAT TATGGGATGA CAGAGCCTGG
CAAACATCTG GGAGTGGCAG GGCTAGGTGG GTTAGGCCAT GTTGCAGTCA AAATTGGTAA GGCCTTTGGG CTGAAAGTTA
CTGTCATTAG TGGATCTCCA AACAAGGAAG CTGAGGCAGT TGACACACTC GGGGCTGATT CTTTCGTTCT TTCCTCAGAC
CCTGCAAAAA TGAAGGCTGC TATGGGAACC ATGGACTATA TCATAGACAC AATTTCTGCT GTTCATTCGC TGAGTCCACT
GCTTGGTCTG CTGAAGCTGA ATGGGAAGCT AGTTACTGTA GGGTTGCCTA ACAAGCCTCT TGAGGTGCCT ATCTTCCAAA
TAGCCGCAGG AAGGAAGCTT GTAGGGGGGA GCAACTTTGG AGGGATCAAG GAAACCCAGG AAATGCTTGA TTTCTGCGGA
AAGCACAACA TAACTGCAAA TATCGAGCTG ATTAAGATGG ACCAAATCAA CACTGCCATG GAAAGGCTTG GAAAAGGTGA
TGTGAAATAT CGCTTTGTGA TTGATGTGGC CAACTCTTTC TCAAGTTTGT AG

[show][hide][copy]PROTEIN

>Vigan.01G076800.01
MAESAKSPQT ELPHRAFGWA ATDTSGTLSP FHFTRRENGV DDVTVQILFC GVCHSDLHTV KNDWGFTTYP VVPGHEIVGV
VTKVGNNVKY FKAGDKVGVG VIVESCKECE CCQQDLENYC PRPVYTYNSP YYDGTRTQGG YSNIVVVNQR YVLRFPDNLP
LDAGAPLLCA GITVYSPMKY YGMTEPGKHL GVAGLGGLGH VAVKIGKAFG LKVTVISGSP NKEAEAVDTL GADSFVLSSD
PAKMKAAMGT MDYIIDTISA VHSLSPLLGL LKLNGKLVTV GLPNKPLEVP IFQIAAGRKL VGGSNFGGIK ETQEMLDFCG
KHNITANIEL IKMDQINTAM ERLGKGDVKY RFVIDVANSF SSL*