GBrowse Details

Vigan.01G077500.01

Basic Information:
Name: Vigan.01G077500.01
Multiple alignment
Variant Information
Position: Chr01:6268616..6273711 (+ strand)
Length: 5096
Functional Information:
Description: Similar to Ribonucleoside-diphosphate reductase. [V7CR97, Phaseolus vulgaris]
GO: Biological Process: DNA replication (GO:0006260)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: ribonucleoside-diphosphate reductase complex (GO:0005971)
Molecular Function: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor (GO:0004748)
Molecular Function: ATP binding (GO:0005524)
InterPro: Ribonucleotide reductase large subunit, C-terminal (IPR000788)
ATP-cone (IPR005144)
Ribonucleotide reductase R1 subunit, N-terminal (IPR008926)
Ribonucleotide reductase, class I , alpha subunit (IPR013346)
Ribonucleotide reductase large subunit, N-terminal (IPR013509)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.28,3.83,11.61,2.60,12.60,4.66,9.31,5.27
Arabidopsis thaliana homolog: AT2G21790.1
Automatic updates:
Name: AF118784 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribonucleotide reductase large subunit A mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001249537 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribonucleotide reductase large subunit B (LOC547948), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250597 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribonucleoside-diphosphate reductase large subunit (LOC548020), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:6268616..6268977 (+ strand)
Length: 362
Type: five_prime_UTR
Position: Chr01:6268978..6269205 (+ strand)
Length: 228
Type: CDS
Position: Chr01:6269290..6269351 (+ strand)
Length: 62
Type: CDS
Position: Chr01:6269432..6269519 (+ strand)
Length: 88
Type: CDS
Position: Chr01:6269808..6270071 (+ strand)
Length: 264
Type: CDS
Position: Chr01:6270188..6270428 (+ strand)
Length: 241
Type: CDS
Position: Chr01:6270512..6270588 (+ strand)
Length: 77
Type: CDS
Position: Chr01:6270720..6270890 (+ strand)
Length: 171
Type: CDS
Position: Chr01:6270991..6271083 (+ strand)
Length: 93
Type: CDS
Position: Chr01:6271180..6271329 (+ strand)
Length: 150
Type: CDS
Position: Chr01:6271439..6271525 (+ strand)
Length: 87
Type: CDS
Position: Chr01:6271651..6271815 (+ strand)
Length: 165
Type: CDS
Position: Chr01:6271904..6272023 (+ strand)
Length: 120
Type: CDS
Position: Chr01:6272183..6272385 (+ strand)
Length: 203
Type: CDS
Position: Chr01:6272461..6272610 (+ strand)
Length: 150
Type: CDS
Position: Chr01:6272689..6272836 (+ strand)
Length: 148
Type: CDS
Position: Chr01:6273145..6273228 (+ strand)
Length: 84
Type: CDS
Position: Chr01:6273307..6273405 (+ strand)
Length: 99
Type: CDS
Position: Chr01:6273406..6273711 (+ strand)
Length: 306
Type: three_prime_UTR


>Vigan.01G077500.01
TTTCAGTATC CAACGGTCCT CAGTAGATAG AGCAGCGGGA TGAAGAAGTG TATAAAAGAT GGAAAGGAAA TGAGTCCAAG
AAAACAGCTT CCCCACTTTA TTTTCAAAAG AACGTGGTCC CGCATCAGGC GTAACCCGCG CTGTGAAGCT CCCACCATTT
CATTCAAGTT CCAAATCCAA CTTTCTCGCG GGAAAATTTC GAATCCAACA CATTTGAGAG GGAACCATCA TTATTTGGTA
AAAACAAATC AAAAACCCAA ACAATTATCA CCCTATACTC ACCCTATTTA TACACTTGTG CCTGCGTCGA AACTGTTCGA
CGAAATTCTC CACTGACAAA CACAAAAAAC AGAGTAGAGG AAATGTATGT GGTGAAGAGA GACGGGAGGC AAGAGGCGGT
GCATTTTGAT AAGATCACGG CTCGCCTCAA GAAACTGAGT TATGGTTTAA GCACAGAACA CTGCGACCCC GTTCTGGTGT
CTCAGAAAGT GTGCGCTGGT GTCTACAAAG GCGTCACGAC CAGTCAGCTC GATGAGTTGG CTGCGGAAAC CGCTGCTGCC
TTGACTGCTA ACCACCCTGA TTATGCTTCT TTGGCTGCGA GGATTGCCGT TTCTAATCTG CACAAGAACA CGAAGAAGTC
ATTTTCTGAA ACGATTAAAA TTATGCGTAA TCATTTTAGT GAAAGATCTG GAATGAAGGC TCCTCTGATT GCTGATGACA
TCTATGAAAT TATTATCAAG AATGCTGCTC GATTGGACAG TGAAATAATC TATGATAGGG ACTTTGACTA TGATTATTTT
GGTTTCAAAA CCCTTGAGAG GTCCTACCTC TTAAAGGTTC AAGGCAAGGT TGTGGAAAGA CCACAACACA TGTTGATGAG
GGTTGCTGTT GGAATTCATA AGGAAGACAT TGATGCTGCT GTCAAAACTT ACCACCTGAT GTCTCAACGG TGGTTCACTC
ATGCATCTCC AACTCTTTTC AACGCGGGAA CACCTAGACC ACAGTTGAGT AGTTGCTTCC TTGTGTGCAT GAAAGATGAT
AGTATAGAGG GAATATATGA CACTTTGAAG GAGTGTGCTA TCATTAGCAA ATCAGCCGGT GGAATTGGTG TTTCTGTTCA
CAATATTCGT GCCACAGGCA GTTACATCCG TGGCACAAAT GGGACATCAA ATGGTATTGT TCCAATGCTG CGTGTGTTCA
ATGATACTGC TCGTTACGTG GATCAAGGGG GAGGCAAAAG GAAAGGTGCA TTTGCTGTGT ACCTGGAGCC ATGGCATGCT
GATGTATTTG AATTCTTGGA TTTAAGGAAA AATCATGGAA AGGAAGAGCA TCGTGCTAGA GATTTGTTTT ATGCTCTTTG
GGTGCCTGAT CTCTTTATGG AAAGAGTTCA GAGCAATGGG CAATGGTCTT TGTTTTGCCC CAATGAATCT CCAGGTTTGG
CTGATTGTTG GGGTGAAGAA TTTGAGAAAC TGTACACTCA GTACGAAAGA GAAGGAAAAG CAAAGAAGGT TGTTCAGGCA
CAGAGCCTCT GGTTTGAAAT TTTGAAGTCC CAGATTGAAA CTGGAACCCC TTATATGCTT TTTAAGGACA CTTGCAACAG
GAAAAGCAAT CAACAGAATC TGGGAACAAT CAAGTCATCA AACTTGTGCA CTGAGATAAT TGAGTATACA AGTCCAACGG
AAACTGCTGT GTGCAATTTG GCATCAATTG CTCTACCACG ATATGTAAGA GAGAAGGGTG TGCCCATGGA ATCTCATCCA
TCTAAGCTTG TTGGGAGCAG GGGCTCAAAG AACCGATACT TTGACTTTGA CAAATTGGGC GAGGTTACTG CAACGGTGAC
AACAAACCTT AATAAAATAA TCGATGTTAA TTACTACCCA ATTGAGAATG CTAGAAGATC AAACTTACGA CACAGACCCA
TTGGAATTGG AGTTCAAGGT CTTGCTGATA CTTTCATACT ACTTGGCATG GCATTTGATT CACCAGAGGC TCAACAGTTA
AACAAGGATA TATTTGAGAC AATATACTAT CACGCACTAA AAACTTCTTG TGAATTGGCT GCAAAAGAGG GTCCCTATGA
AACATATAGT GGGAGTCCGA TGAGCAAGGG AATTCTTCAG CCAGACATGT GGGGTGTGAT ACCCTCAAGT CGTTGGAATT
GGGATGCACT TCGGGAAGTG ATATCTAAGA CGGGTGTGAG AAATTCACTT CTTGTTGCCC CTATGCCAAC TGCATCTACT
AGCCAGATTC TTGGCAATAA TGAGTGTTTT GAGCCATATA CTTCTAATAT CTACAGTCGC AGAGTTCTAA GTGGTGAGTT
TGTTGTAGTG AACAAGCATT TACTTCACGA CTTGACTGAA ATGGGACTTT GGTCTCCTAC AATCAAGAAT AAGATAATCT
ATGAGGACGG TTCAGTTCAG AAAATTCCAG AAATAACTGA TGACCTAAAA GTCATATACA AGACTGTTTG GGAGATAAAG
CAAAAGACAT TGGTTGATAT GGCTGTTGAT AGAGGATGTT ACATAGATCA AAGCCAAAGC TTAAATATTC ATATGGATCA
ACCCAACTTT GGAAAGTTGA CTTCTTTGCA TTTCTATGCC TGGTCAAAGG GTTTGAAGAC TGGGATGTAT TATCTGCGAT
CACGTGCAGC AGCTGATGCT ATCAAGTTCA CCGTTGATAC CTCTCTGCTC AAAGAAAAAC CCACAGTTGA GGAAGAGGAT
GATAATACCA AGATGGCGCA GATGGTGTGC TCTCTAACAA ACAGAGAAGA GTGCTTGGCT TGTGGAAGTT AAGGGCATTC
AAACTTAAAG TTGCATTCTT ACTGGTTAAT TTTGTGCAAG CCTCAACAAG TTATTCTGAA AGAGCACTAC TTTAGCAGTG
CAGGCTTTGG CATTTGTGAT ACAAGGTCGA ATCCATACAT GACTATCTCA ATCATTCTAA ATTATCTTTA CTTTGTATAG
TAGTTGTGAT GTTAAGTTTC ATTTGTATTA TATGTTAAAT AGTTGAAGAA TGTTAGGATA GTGGGATGTC TTTCTATATT
TAGATTAGAT TCGTCATCGA ATAGATTAAG TTAATGTTGG TTCAATGTTT AATGATTG

>Vigan.01G077500.01
ATGTATGTGG TGAAGAGAGA CGGGAGGCAA GAGGCGGTGC ATTTTGATAA GATCACGGCT CGCCTCAAGA AACTGAGTTA
TGGTTTAAGC ACAGAACACT GCGACCCCGT TCTGGTGTCT CAGAAAGTGT GCGCTGGTGT CTACAAAGGC GTCACGACCA
GTCAGCTCGA TGAGTTGGCT GCGGAAACCG CTGCTGCCTT GACTGCTAAC CACCCTGATT ATGCTTCTTT GGCTGCGAGG
ATTGCCGTTT CTAATCTGCA CAAGAACACG AAGAAGTCAT TTTCTGAAAC GATTAAAATT ATGCGTAATC ATTTTAGTGA
AAGATCTGGA ATGAAGGCTC CTCTGATTGC TGATGACATC TATGAAATTA TTATCAAGAA TGCTGCTCGA TTGGACAGTG
AAATAATCTA TGATAGGGAC TTTGACTATG ATTATTTTGG TTTCAAAACC CTTGAGAGGT CCTACCTCTT AAAGGTTCAA
GGCAAGGTTG TGGAAAGACC ACAACACATG TTGATGAGGG TTGCTGTTGG AATTCATAAG GAAGACATTG ATGCTGCTGT
CAAAACTTAC CACCTGATGT CTCAACGGTG GTTCACTCAT GCATCTCCAA CTCTTTTCAA CGCGGGAACA CCTAGACCAC
AGTTGAGTAG TTGCTTCCTT GTGTGCATGA AAGATGATAG TATAGAGGGA ATATATGACA CTTTGAAGGA GTGTGCTATC
ATTAGCAAAT CAGCCGGTGG AATTGGTGTT TCTGTTCACA ATATTCGTGC CACAGGCAGT TACATCCGTG GCACAAATGG
GACATCAAAT GGTATTGTTC CAATGCTGCG TGTGTTCAAT GATACTGCTC GTTACGTGGA TCAAGGGGGA GGCAAAAGGA
AAGGTGCATT TGCTGTGTAC CTGGAGCCAT GGCATGCTGA TGTATTTGAA TTCTTGGATT TAAGGAAAAA TCATGGAAAG
GAAGAGCATC GTGCTAGAGA TTTGTTTTAT GCTCTTTGGG TGCCTGATCT CTTTATGGAA AGAGTTCAGA GCAATGGGCA
ATGGTCTTTG TTTTGCCCCA ATGAATCTCC AGGTTTGGCT GATTGTTGGG GTGAAGAATT TGAGAAACTG TACACTCAGT
ACGAAAGAGA AGGAAAAGCA AAGAAGGTTG TTCAGGCACA GAGCCTCTGG TTTGAAATTT TGAAGTCCCA GATTGAAACT
GGAACCCCTT ATATGCTTTT TAAGGACACT TGCAACAGGA AAAGCAATCA ACAGAATCTG GGAACAATCA AGTCATCAAA
CTTGTGCACT GAGATAATTG AGTATACAAG TCCAACGGAA ACTGCTGTGT GCAATTTGGC ATCAATTGCT CTACCACGAT
ATGTAAGAGA GAAGGGTGTG CCCATGGAAT CTCATCCATC TAAGCTTGTT GGGAGCAGGG GCTCAAAGAA CCGATACTTT
GACTTTGACA AATTGGGCGA GGTTACTGCA ACGGTGACAA CAAACCTTAA TAAAATAATC GATGTTAATT ACTACCCAAT
TGAGAATGCT AGAAGATCAA ACTTACGACA CAGACCCATT GGAATTGGAG TTCAAGGTCT TGCTGATACT TTCATACTAC
TTGGCATGGC ATTTGATTCA CCAGAGGCTC AACAGTTAAA CAAGGATATA TTTGAGACAA TATACTATCA CGCACTAAAA
ACTTCTTGTG AATTGGCTGC AAAAGAGGGT CCCTATGAAA CATATAGTGG GAGTCCGATG AGCAAGGGAA TTCTTCAGCC
AGACATGTGG GGTGTGATAC CCTCAAGTCG TTGGAATTGG GATGCACTTC GGGAAGTGAT ATCTAAGACG GGTGTGAGAA
ATTCACTTCT TGTTGCCCCT ATGCCAACTG CATCTACTAG CCAGATTCTT GGCAATAATG AGTGTTTTGA GCCATATACT
TCTAATATCT ACAGTCGCAG AGTTCTAAGT GGTGAGTTTG TTGTAGTGAA CAAGCATTTA CTTCACGACT TGACTGAAAT
GGGACTTTGG TCTCCTACAA TCAAGAATAA GATAATCTAT GAGGACGGTT CAGTTCAGAA AATTCCAGAA ATAACTGATG
ACCTAAAAGT CATATACAAG ACTGTTTGGG AGATAAAGCA AAAGACATTG GTTGATATGG CTGTTGATAG AGGATGTTAC
ATAGATCAAA GCCAAAGCTT AAATATTCAT ATGGATCAAC CCAACTTTGG AAAGTTGACT TCTTTGCATT TCTATGCCTG
GTCAAAGGGT TTGAAGACTG GGATGTATTA TCTGCGATCA CGTGCAGCAG CTGATGCTAT CAAGTTCACC GTTGATACCT
CTCTGCTCAA AGAAAAACCC ACAGTTGAGG AAGAGGATGA TAATACCAAG ATGGCGCAGA TGGTGTGCTC TCTAACAAAC
AGAGAAGAGT GCTTGGCTTG TGGAAGTTAA 

>Vigan.01G077500.01
MYVVKRDGRQ EAVHFDKITA RLKKLSYGLS TEHCDPVLVS QKVCAGVYKG VTTSQLDELA AETAAALTAN HPDYASLAAR
IAVSNLHKNT KKSFSETIKI MRNHFSERSG MKAPLIADDI YEIIIKNAAR LDSEIIYDRD FDYDYFGFKT LERSYLLKVQ
GKVVERPQHM LMRVAVGIHK EDIDAAVKTY HLMSQRWFTH ASPTLFNAGT PRPQLSSCFL VCMKDDSIEG IYDTLKECAI
ISKSAGGIGV SVHNIRATGS YIRGTNGTSN GIVPMLRVFN DTARYVDQGG GKRKGAFAVY LEPWHADVFE FLDLRKNHGK
EEHRARDLFY ALWVPDLFME RVQSNGQWSL FCPNESPGLA DCWGEEFEKL YTQYEREGKA KKVVQAQSLW FEILKSQIET
GTPYMLFKDT CNRKSNQQNL GTIKSSNLCT EIIEYTSPTE TAVCNLASIA LPRYVREKGV PMESHPSKLV GSRGSKNRYF
DFDKLGEVTA TVTTNLNKII DVNYYPIENA RRSNLRHRPI GIGVQGLADT FILLGMAFDS PEAQQLNKDI FETIYYHALK
TSCELAAKEG PYETYSGSPM SKGILQPDMW GVIPSSRWNW DALREVISKT GVRNSLLVAP MPTASTSQIL GNNECFEPYT
SNIYSRRVLS GEFVVVNKHL LHDLTEMGLW SPTIKNKIIY EDGSVQKIPE ITDDLKVIYK TVWEIKQKTL VDMAVDRGCY
IDQSQSLNIH MDQPNFGKLT SLHFYAWSKG LKTGMYYLRS RAAADAIKFT VDTSLLKEKP TVEEEDDNTK MAQMVCSLTN
REECLACGS*