GBrowse Details

Vigan.01G078600.01

Basic Information:
Name: Vigan.01G078600.01
Multiple alignment
Variant Information
Position: Chr01:6345086..6347175 (+ strand)
Length: 2090
Functional Information:
Description: Similar to Uncharacterized protein. [C6SWW8, Glycine max]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3 (IPR027141)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.80,62.63,47.57,52.36,63.06,101.75,65.14,41.77
Arabidopsis thaliana homolog: AT1G20580.1
Automatic updates:
Name: NM_001250793 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305856 (LOC100305856), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:6345086..6345215 (+ strand)
Length: 130
Type: five_prime_UTR
Position: Chr01:6345216..6345374 (+ strand)
Length: 159
Type: CDS
Position: Chr01:6346193..6346245 (+ strand)
Length: 53
Type: CDS
Position: Chr01:6346378..6346444 (+ strand)
Length: 67
Type: CDS
Position: Chr01:6346530..6346586 (+ strand)
Length: 57
Type: CDS
Position: Chr01:6346720..6346779 (+ strand)
Length: 60
Type: CDS
Position: Chr01:6346780..6347175 (+ strand)
Length: 396
Type: three_prime_UTR


>Vigan.01G078600.01
GGGTAGAGAA AAAAATTAGG GTATAGTGAA TAGTGATAGA CAGTGGATGC AATACAAATC TCAAATCTCG TGTTTCAGTG
AAGTAGGGTT TTTGAGTTGG TTTGTTTGAG AGAGAAAGCC AAGAACCATC ATGAGCAGAA GTTTGGGAAT TCCGGTGAAG
CTTCTCCACG AGGCTTCGGG ACACGTGGTG ACGGTGGAGC TCAAGAGCGG AGAACTCTAC AGAGGGAGCA TGATCGAATG
CGAGGACAAT TGGAACTGTC AACTCGAGAG CATCACCTAC ACTGCCAAGG ATGGAAAAAC ATCGCAACTT GAGCACGTGT
TTATTCGAGG AAGCAAAGTC AGGTTTATGG TCATACCAGA CATGCTGAAG AATGCTCCTA TGTTTAAGCG TTTGGATGCA
AGAATCAAGG GCAAGGGTGC ATCACTCGGT GTTGGTAGGG GCAGAGCAGT TGCAATGCGA GCAAAGGCTC AAGCTGCTGG
TCGTGGAGCT GCACCTGGAA GAGGTGTACC ACCAGTGAGG AGGTGATCAC CATTCATATA GTCTGTATTC TCTCTGAACA
TGATATTTAG ATTCTTTTGT AGAAGTTGAG AGAAAGAAAT TCGAACACAA ATTGCCTATC AAGTTTACGG ATTACTCTTT
ATGGATAGTA CTTAATCTTG TTCTCATCAC CTCCAGTGTT TTGTGTCTGG TACTATGTAT TACTTGGCTT GTAGAAGAGA
TTTGTAAAAG GGGTATGGAG CAACTTTCAA AAGTAGTTTA ACTTGTTACA AAATGGTATC AGTTGCACAT TGGTAGAGTA
GTTTTACGGG AAAACTCTCA AAGCTGGTTT CGAAATGTTA GTGATAAATT GTGGCTTGTT TGAAACTGCG GAGATTTTTT
GTTTGTTTCT AACTATAGTT TCGTTAAATG GTTTTGAAAA AG

>Vigan.01G078600.01
ATGAGCAGAA GTTTGGGAAT TCCGGTGAAG CTTCTCCACG AGGCTTCGGG ACACGTGGTG ACGGTGGAGC TCAAGAGCGG
AGAACTCTAC AGAGGGAGCA TGATCGAATG CGAGGACAAT TGGAACTGTC AACTCGAGAG CATCACCTAC ACTGCCAAGG
ATGGAAAAAC ATCGCAACTT GAGCACGTGT TTATTCGAGG AAGCAAAGTC AGGTTTATGG TCATACCAGA CATGCTGAAG
AATGCTCCTA TGTTTAAGCG TTTGGATGCA AGAATCAAGG GCAAGGGTGC ATCACTCGGT GTTGGTAGGG GCAGAGCAGT
TGCAATGCGA GCAAAGGCTC AAGCTGCTGG TCGTGGAGCT GCACCTGGAA GAGGTGTACC ACCAGTGAGG AGGTGA

>Vigan.01G078600.01
MSRSLGIPVK LLHEASGHVV TVELKSGELY RGSMIECEDN WNCQLESITY TAKDGKTSQL EHVFIRGSKV RFMVIPDMLK
NAPMFKRLDA RIKGKGASLG VGRGRAVAMR AKAQAAGRGA APGRGVPPVR R*