VIGGS:GBrowse

Vigan.01G080300.01

Basic Information:

Name:	Vigan.01G080300.01 Multiple alignment Variant Information
Position:	Chr01:6530143..6536804 (+ strand)
Length:	6662

Functional Information:

Description:	Similar to uncharacterized LOC101206523. [XP_004166588.1, Cucumis sativus]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.37,0.86,3.08,2.86,12.94,8.07,1.38,1.38

Automatic updates:

Name:	NM_001250216 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306075 (LOC100306075), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:6530143..6530290 (+ strand)
Length:	148
Type:	five_prime_UTR

Position:	Chr01:6530291..6530308 (+ strand)
Length:	18
Type:	CDS

Position:	Chr01:6531264..6531500 (+ strand)
Length:	237
Type:	CDS

Position:	Chr01:6536527..6536574 (+ strand)
Length:	48
Type:	CDS

Position:	Chr01:6536575..6536804 (+ strand)
Length:	230
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G080300.01
TTATAATGAA CCGCGTTGAA CAGAGAGAAA CCAAGTCAGA CACGTATAGA ACACTTGTTG CACCAAATTC TAGCCAATTA
GCAGTGCACG AAAGACTTAA CACACCGGCT ATTACTTCCA CGCCCATTTC CAGATCTCAA CAACACTCAT GGACCGTCGT
AAAGAGAAAA ATGGCACTTG GCTATCAGTA CCACAATTTG GAGACTGGGA TCAGAAGGGC CAAGTGCCAG ACTACTCTCT
TGATTTCTCA AAGATAAGGG AAACTAGGAA GCAGAACAAG ACAAACATTT CGAGGGCAAG TCTTGGTAAT GAAGAAGAGT
TCGATGATTC AACCTCGAGC AGCGCAAACA CTGGTCACAG TGAGCACTCC CAACCTCACT ACCATCAAAC GGTTCCTCCA
AATGCAAGGA AGAGCTTCTT CAGCTACTTC AGTTGTTGTG TGAAAGCCTA AAATTAATTT GAGGGCAATT GTTTTCAGAC
GATTCTGGAT AGGAACATTT ATGCTTTGTT CGTTTGGTGA TCTTCATTTC AAAACAAATA TTTCTTTTTC AGTTCTAATC
TTCCTGTCGT GATTAGGCAA TCGTAGCTCA AAATTCGGTT AAATCCTCTT GGGATTATTT TAGGGTATTA AGAGATACAC
CGTAAAACTC ATTACCAATA GATAAGAATT ATTACACTCA A

[show][hide][copy]CDS

>Vigan.01G080300.01
ATGGACCGTC GTAAAGAGAA AAATGGCACT TGGCTATCAG TACCACAATT TGGAGACTGG GATCAGAAGG GCCAAGTGCC
AGACTACTCT CTTGATTTCT CAAAGATAAG GGAAACTAGG AAGCAGAACA AGACAAACAT TTCGAGGGCA AGTCTTGGTA
ATGAAGAAGA GTTCGATGAT TCAACCTCGA GCAGCGCAAA CACTGGTCAC AGTGAGCACT CCCAACCTCA CTACCATCAA
ACGGTTCCTC CAAATGCAAG GAAGAGCTTC TTCAGCTACT TCAGTTGTTG TGTGAAAGCC TAA

[show][hide][copy]PROTEIN

>Vigan.01G080300.01
MDRRKEKNGT WLSVPQFGDW DQKGQVPDYS LDFSKIRETR KQNKTNISRA SLGNEEEFDD STSSSANTGH SEHSQPHYHQ
TVPPNARKSF FSYFSCCVKA *