GBrowse Details

Vigan.01G080700.01

Basic Information:
Name: Vigan.01G080700.01
Multiple alignment
Variant Information
Position: Chr01:6560661..6566297 (+ strand)
Length: 5637
Functional Information:
Description: Similar to shikimate kinase 1, chloroplastic-like isoform X1. [XP_004504020.1, Cicer arietinum]
InterPro: Shikimate kinase/Threonine synthase-like 1 (IPR000623)
Shikimate kinase, conserved site (IPR023000)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.74,4.38,9.43,19.32,15.25,20.13,14.07,20.72
Arabidopsis thaliana homolog: AT2G21940.4
Structure :
Position: Chr01:6560661..6560850 (+ strand)
Length: 190
Type: five_prime_UTR
Position: Chr01:6560851..6561055 (+ strand)
Length: 205
Type: CDS
Position: Chr01:6562104..6562162 (+ strand)
Length: 59
Type: CDS
Position: Chr01:6562318..6562372 (+ strand)
Length: 55
Type: CDS
Position: Chr01:6562453..6562525 (+ strand)
Length: 73
Type: CDS
Position: Chr01:6562957..6563044 (+ strand)
Length: 88
Type: CDS
Position: Chr01:6564876..6564958 (+ strand)
Length: 83
Type: CDS
Position: Chr01:6565060..6565189 (+ strand)
Length: 130
Type: CDS
Position: Chr01:6565354..6565432 (+ strand)
Length: 79
Type: CDS
Position: Chr01:6565590..6565654 (+ strand)
Length: 65
Type: CDS
Position: Chr01:6565780..6565839 (+ strand)
Length: 60
Type: CDS
Position: Chr01:6565840..6566297 (+ strand)
Length: 458
Type: three_prime_UTR


>Vigan.01G080700.01
CGTCATTCCA TTTTATTATA ATTATAAATT AATATTACAC TCAGCCTCCA TTCCAATTAG ACTCTATTTT TCCATTTTCT
CTCTCTCTTT CTCTGCACCT TCTTCTTCTC CTTCACTTCC TCTGGATTTT GGTTCCGTCG TTTCGGTTAT CTTGCATCGT
AATCGAGGGG AAAACTGTGT CGTTTCAGCA ATGGACGTGA AAGCTGCACG TGGGTTACAA CTTTCAGCGG TTGTTCAGCA
TGAAAAGATT GGGAGAAGAC CCAGAGCTGG TCGTTTGGGT ATGTCTCCAG AACCGCAGAG GATTCGGCTT TTTGTTTCCA
CCAGGTTGTC TTCAACCGTG ACACGCCGCA GAACAACCTC TCTGGAGGTT TCTTCTTCTT ACGACAACGT TTCAGCTTCA
ATATTGGAAT CTGGACATGT TCGTTCTCCT CTTGACGAAG AATTGATTCT AAAGAATAGA TCGCAAGAGA TCCAACCATA
TTTAAATGGA CGCTGTATAT ATCTTGTTGG AATGATGGGC TCTGGGAAAA CCACTGTGGG GAAGATAATG TCGCAAGTAC
TTGGTTATTC ATTTTGTGAC AGCGATACAC TGGTGGAGGA GGAGGTTGGA GGAAACTCTG TAGCTGATAT TTTCAAGCAC
CATGGTGAGC CTTTCTTTCG TAATAAGGAG ACTGAGGTAT TGCGGAAGCT TTCCCTGATG CGTCAACTTG TTATTTCTAC
TGGTGGAGGT GCTGTTATAA GGCCCATTAA TTGGAAATAT ATGCACAAGG GGGTTAGTGT TTGGTTGGAC GTACCAGTGG
AAGCCTTGGC ACGGAGAATT GCCGCTGTAG GAACTAATTC TCGCCCCCTT CTACACTATG AAGCAGGGGA TCCTTATTCA
CGGGCCTTTA TGCGATTGTC TGCTATTTTT GAAGAGAGAG GCGAGTCTTA CGCCAACGCC AATGCCAGGG TCTCGTTAAA
AAGTATAGCA ATAAAACTCG GAAAAAGAGA TGTGTCGGAA TTGTCTCCAA CTGATATTGC AATTGAGGCA CTGGATCAAA
TTGACAACTT TTTGAAGGGT GAAGGTGACA GTTATGCAGA ATGCTAATGC CAGCTTTGCT CACAAACTTC ATTCGATTGT
TCATATTTTT GTTCTATGCA ATTTACGATT GCAATTAAGG TCAAGTCGTT GACCTTAATC TACATGTTGT GCAGTATCTC
TTTGGTAAAA AAAGAAGTAA TACATCATGG CACTTGTTTA AGCGTAATTT GTGTCAGCAA GTTAGCATGA TATGATTGTC
AATAGCAACG GTATTTAATT TATGTTTCCT TTATTGTTGA TGTATATGTA TATATTTACT GGAAAACAAA GTACTGTAAT
GCGAGTTGAG TTGATCAATA TATGTATGTC CTCCTCGAAC GAGGTTTTTG TACGTAGTAA AGCTGCACTC ACATACTTTT
ATCTTACATA CATCTCCCAT GCGAGCATTT GGCGTTGTCG TGTTTTATGG TTGTTCTTGT GCGAAAGAAA TCTAAAACAC
TCGCCAGTTA TCTTTCAATT CTAAA

>Vigan.01G080700.01
ATGGACGTGA AAGCTGCACG TGGGTTACAA CTTTCAGCGG TTGTTCAGCA TGAAAAGATT GGGAGAAGAC CCAGAGCTGG
TCGTTTGGGT ATGTCTCCAG AACCGCAGAG GATTCGGCTT TTTGTTTCCA CCAGGTTGTC TTCAACCGTG ACACGCCGCA
GAACAACCTC TCTGGAGGTT TCTTCTTCTT ACGACAACGT TTCAGCTTCA ATATTGGAAT CTGGACATGT TCGTTCTCCT
CTTGACGAAG AATTGATTCT AAAGAATAGA TCGCAAGAGA TCCAACCATA TTTAAATGGA CGCTGTATAT ATCTTGTTGG
AATGATGGGC TCTGGGAAAA CCACTGTGGG GAAGATAATG TCGCAAGTAC TTGGTTATTC ATTTTGTGAC AGCGATACAC
TGGTGGAGGA GGAGGTTGGA GGAAACTCTG TAGCTGATAT TTTCAAGCAC CATGGTGAGC CTTTCTTTCG TAATAAGGAG
ACTGAGGTAT TGCGGAAGCT TTCCCTGATG CGTCAACTTG TTATTTCTAC TGGTGGAGGT GCTGTTATAA GGCCCATTAA
TTGGAAATAT ATGCACAAGG GGGTTAGTGT TTGGTTGGAC GTACCAGTGG AAGCCTTGGC ACGGAGAATT GCCGCTGTAG
GAACTAATTC TCGCCCCCTT CTACACTATG AAGCAGGGGA TCCTTATTCA CGGGCCTTTA TGCGATTGTC TGCTATTTTT
GAAGAGAGAG GCGAGTCTTA CGCCAACGCC AATGCCAGGG TCTCGTTAAA AAGTATAGCA ATAAAACTCG GAAAAAGAGA
TGTGTCGGAA TTGTCTCCAA CTGATATTGC AATTGAGGCA CTGGATCAAA TTGACAACTT TTTGAAGGGT GAAGGTGACA
GTTATGCAGA ATGCTAA

>Vigan.01G080700.01
MDVKAARGLQ LSAVVQHEKI GRRPRAGRLG MSPEPQRIRL FVSTRLSSTV TRRRTTSLEV SSSYDNVSAS ILESGHVRSP
LDEELILKNR SQEIQPYLNG RCIYLVGMMG SGKTTVGKIM SQVLGYSFCD SDTLVEEEVG GNSVADIFKH HGEPFFRNKE
TEVLRKLSLM RQLVISTGGG AVIRPINWKY MHKGVSVWLD VPVEALARRI AAVGTNSRPL LHYEAGDPYS RAFMRLSAIF
EERGESYANA NARVSLKSIA IKLGKRDVSE LSPTDIAIEA LDQIDNFLKG EGDSYAEC*