VIGGS:GBrowse

Vigan.01G088600.01

Basic Information:

Name:	Vigan.01G088600.01 Multiple alignment Variant Information
Position:	Chr01:7421066..7424606 (+ strand)
Length:	3541

Functional Information:

Description:	Similar to Small GTP-binding protein. [Q39844, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:57.96,67.14,35.91,31.90,45.21,75.24,38.87,48.48

Automatic updates:

Name:	NM_001317460 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein Rab11A (LOC547878), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:7421066..7421396 (+ strand)
Length:	331
Type:	five_prime_UTR

Position:	Chr01:7421397..7421638 (+ strand)
Length:	242
Type:	CDS

Position:	Chr01:7423836..7424283 (+ strand)
Length:	448
Type:	CDS

Position:	Chr01:7424284..7424606 (+ strand)
Length:	323
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G088600.01
TTCCGCAACG CGTAAAATGG TGGTGGGATC AGAGGAAAGT AAGATAGAAG GAGCTGTCCT CAACAACCGT TTCACTCTTC
TTCAAACACT CTTTTATGAA ACCAAACCAA CTAACTTCTA ATTGGTGTGG GGAAACACGT CTCTACGCTT CCACCTCATT
CCAACACGTG TCACCTGACA CGTGTCCCTC CAAAAAATAC CAATAAATGT AAACGATGAA GAAATAAATT TCTCCTTTGA
TTGATGAAAA AAAAAAGGAA CAAAAAAGAT CGTCACCTTT TATTCGAGTT TTGAGGTGAA AGGGAAGGAG ACAGTTAGAA
AGAGAGTGGA AATGGCAGGT GCGGGTGCAG GAGGAGGGTA TGGGGACGCG AACCAGAGGA TAGATTACGT CTTCAAGGTG
GTGCTGATTG GTGACTCTGC GGTGGGGAAG TCACAGATTC TAGCGAGGTT TGCCAGGAAC GAGTTCAGCT TGGACTCAAA
GTCCACCATC GGTGTTGAAT TTCAGACGCG GACTTTGCTC ATCGATCACA AGACCGTTAA GGCTCAGATC TGGGACACGG
CTGGCCAAGA ACGCTACAGA GCAGTTACAA GTGCATACTA CAGGGGTGCT GTGGGGGCAA TGTTGGTTTA TGATATCACT
AAACGCCAAA CCTTTGATCA CATACCCCGG TGGTTAGAAG AGCTGCGCAA CCATGCTGAC AAGAACATAG TGATAATTCT
GATAGGAAAC AAATGTGATC TTGAGAACCA GCGTGATGTA CCCACCGAGG ATGCAAAAGA ATTTGCTGAG AAAGAAGGGT
TGTTTTTCCT AGAGACCTCA GCACTGGAAG CAACTAATGT TGAAACAGCC TTCGTAACTG TCTTGACAGA AATATACAAC
ATCCTCAACA AGAAGAATCT AACTGCTGAT GAAAGTCAGG GAAATGGTAA CTCCGCATCT TTGTCTGGCC AGAAGATTAT
CGTTCCAGGC CCTTCACAGG AACTTCCTGC TAGGAGGAAT ATGTGTTGTC AAGCATCTTG ACTTATTTAT AATTAATTTC
TATAGTGTAT CTCATGCTTG TGTTCTTGTT ACCAAATTTT AAAGGTTTTG GCGCATTGCT TTTTGTACAT TTAAATTTAA
TTTGTTTGGG TTGCCGAGTA AACCACTAAA ATGAACAATT GCGTGGTTCA ATATATACGT GATTTTTGTA GGTGAATTGG
TGGAACTTGG AACGTTCTCG CACTTGATAA TGTCATCACT CTTGTTTGTA GTTTTGACAT GGCTACATTT TGTTGGTACG
GCAAAGCGAT CATGAGATAC GTATGTGCAG ATAATGGGTT TTTCAATTAT AGCTTCAACC GTCC

[show][hide][copy]CDS

>Vigan.01G088600.01
ATGGCAGGTG CGGGTGCAGG AGGAGGGTAT GGGGACGCGA ACCAGAGGAT AGATTACGTC TTCAAGGTGG TGCTGATTGG
TGACTCTGCG GTGGGGAAGT CACAGATTCT AGCGAGGTTT GCCAGGAACG AGTTCAGCTT GGACTCAAAG TCCACCATCG
GTGTTGAATT TCAGACGCGG ACTTTGCTCA TCGATCACAA GACCGTTAAG GCTCAGATCT GGGACACGGC TGGCCAAGAA
CGCTACAGAG CAGTTACAAG TGCATACTAC AGGGGTGCTG TGGGGGCAAT GTTGGTTTAT GATATCACTA AACGCCAAAC
CTTTGATCAC ATACCCCGGT GGTTAGAAGA GCTGCGCAAC CATGCTGACA AGAACATAGT GATAATTCTG ATAGGAAACA
AATGTGATCT TGAGAACCAG CGTGATGTAC CCACCGAGGA TGCAAAAGAA TTTGCTGAGA AAGAAGGGTT GTTTTTCCTA
GAGACCTCAG CACTGGAAGC AACTAATGTT GAAACAGCCT TCGTAACTGT CTTGACAGAA ATATACAACA TCCTCAACAA
GAAGAATCTA ACTGCTGATG AAAGTCAGGG AAATGGTAAC TCCGCATCTT TGTCTGGCCA GAAGATTATC GTTCCAGGCC
CTTCACAGGA ACTTCCTGCT AGGAGGAATA TGTGTTGTCA AGCATCTTGA

[show][hide][copy]PROTEIN

>Vigan.01G088600.01
MAGAGAGGGY GDANQRIDYV FKVVLIGDSA VGKSQILARF ARNEFSLDSK STIGVEFQTR TLLIDHKTVK AQIWDTAGQE
RYRAVTSAYY RGAVGAMLVY DITKRQTFDH IPRWLEELRN HADKNIVIIL IGNKCDLENQ RDVPTEDAKE FAEKEGLFFL
ETSALEATNV ETAFVTVLTE IYNILNKKNL TADESQGNGN SASLSGQKII VPGPSQELPA RRNMCCQAS*