VIGGS:GBrowse

Vigan.01G090800.01

Basic Information:

Name:	Vigan.01G090800.01 Multiple alignment Variant Information
Position:	Chr01:7695922..7698741 (+ strand)
Length:	2820

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KSX8, Glycine max]
GO:	Biological Process: protein N-linked glycosylation (GO:0006487)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830)
InterPro:	Glycosyl transferase, family 17 (IPR006813)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:7.66,4.86,9.47,11.01,10.51,9.75,15.40,14.02
Arabidopsis thaliana homolog:	AT1G12990.1, AT1G67880.1, AT3G01620.1, AT3G27540.1, AT5G14480.1

Automatic updates:

Name:	NM_001317673 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase (LOC100805850), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:7695922..7696334 (+ strand)
Length:	413
Type:	five_prime_UTR

Position:	Chr01:7696335..7696415 (+ strand)
Length:	81
Type:	CDS

Position:	Chr01:7697153..7698247 (+ strand)
Length:	1095
Type:	CDS

Position:	Chr01:7698248..7698741 (+ strand)
Length:	494
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G090800.01
CAGAACATAA GAACGCGTGG AGAAGAGTAG GGAGTGGGAG ACTGAGTAAA AGCATAGTCT GGGTGAAGAC TTTATGTTAT
AAATAAAAAT AGGGGAGAAA ATAAGAATAG CATAGAGAAA GGGGAATCTC AATCAATCAG GTAACGGGAA CTTTTTTATC
AGTTCCGTTG GAGAGCAAGC TTAGCTGTGT GGAGACGACA ACTACCACCC ATTTCCAAAG TTACAGAGAG GACATTACCT
CCTTGTTTCT TCCGTCCTCG ACTCTCTTCC TCCCTATACC CAAACTATAA ACCTCGGATT TTCCTTCCTC TGTCTTTTGC
TCCCTTCACA CGCGCTTTTT TCCTTATACG CTAAGATTTC ACACGCCGAT CTGCTTTTCT TTTCATTCAT TCTTTCATTC
CTTCGACGCC GAAATGTGGT GGATGATGGG CGAGGCTGGA GGGAATTACT CTTCTAAGAA GACCGATGAT CTGTGCAGCA
ATGTTTGTGG CCAGGAATCA AGTCAAGTTT CAAGCATGTC AAGGATTCGT TGCATTCTGC GTGGTTTGGA TGTTAAAACC
TACATCTTCA TGTTTGCCGT TGTCCCAATG TGCATCTTTG GATTCTATAT ACATGGGCAA AAGATCTCTT ACTTTCTGAG
GCCCCTATGG GAAAAAGCAC CAAAGCCTTT CAATGTCATC CCTCATTACT ATAACGAAAA TGTCACCATG GAGAATCTCT
GCAGACTTCA TGGCTGGGGA GTCCGGGAAT ATCCTAGACG TGTTTATGAT GCTGTGTTGT TTAGTAATGA GTTGGAAATA
CTAACCTTGC GATGGAGAGA ACTGTACCCT TACATAACTG ATTTTGTTCT CCTTGAATCA AATTCTACGT TTACCGGATT
GCCCAAACCT CTGGTTTTCC AAAGCAATAG GGAGCAGTTC AAATTTATCG AGCCACGATT AACTTATGGT ACTATTGGTG
GGAGATTTAA GAAGGGAGAA AACCCATTTG TTGAGGAGGC ATATCAGCGT GTAGCATTGG ACCAGCTCCT CAAGATAGCT
GGTATTAGTG ATGATGACTT GTTGATTATG TCTGATGTGG ATGAGATACC AAGCGCTCAC ACTATTAATC TCCTGAGGTG
GTGTGATGAA GTACCCTCAA TCCTTCATCT GCAGCTGAAA AACTATCTCT ATTCATTTGA ATTTCGCGTT GATGATAAGA
GTTGGAGGGC TTCAATTCAC AGGTATCAGA CTGGGAAGAC AAGGTATGCA CATTATCGCC AATCTGATGA CATGCTGGCC
GATGCTGGCT GGCATTGTAG CTTTTGCTTC CGTCGGATCA GTGATTTCAT TTTTAAGATG AAAGCCTACA GCCACTATGA
TAGAGTCAGA TTCTCTCACT ATTTAAATCC TGATAGAATT CAGAAGGTAA TATGCAAAGG TGCTGATTTG TTTGATATGC
TGCCGGAGGA GTACACTTTC AAGGATATCA TTGGCAAAAT GGGACCAATA CCACATTCCT ATTCTGCAGT TCATCTTCCT
GCTTTTCTTC TGGAAAATGC TGAGAAGTAT AAATTCCTTT TGCCTGGAAA TTGCAAAAGA GAAAAATGAT TTTGGAAAGT
CATTTCTGAT ACTGGCTTGT TCTGAGCTTG TAGCTTGTAC AGCTCAAGTG ACTCTCCTCT GGGTTTTTAA CTGTGGTTGT
GATGATTGTG TGTCAGTTTC ACTCATACAG CTCTATCTTT GTCCAGTGAG ATATTCTTTG GGAATTCATT CATTTCGGAT
AAATTCTTTG ATCTAGAGGG AATTCTGTAT ATAGTTTAGA CCTGGACTTC ATTCGAGGGG AGCAGCAGCA TTTCTACCTT
TGAGCGACTG TTTGAGAAGA GGCTTGTCTT CATGAACCGT GTTTATCATT AATGTGATTG ATCCCCAATA CACGAAATTA
GTCTAAAATC CCCCACTTTT TCCTGTATGG GAAGTTTTGT TTTGCAGACC AATTATTTTC GTATTATTCT TTGTTTATGC
TAATTATCTA ATCCGATTGG TTGGTCTACT ATATCATCAC AATACTGACT CAGTTCTTTG CATTATATAA ATATAGTCTG
CTG

[show][hide][copy]CDS

>Vigan.01G090800.01
ATGTGGTGGA TGATGGGCGA GGCTGGAGGG AATTACTCTT CTAAGAAGAC CGATGATCTG TGCAGCAATG TTTGTGGCCA
GGAATCAAGT CAAGTTTCAA GCATGTCAAG GATTCGTTGC ATTCTGCGTG GTTTGGATGT TAAAACCTAC ATCTTCATGT
TTGCCGTTGT CCCAATGTGC ATCTTTGGAT TCTATATACA TGGGCAAAAG ATCTCTTACT TTCTGAGGCC CCTATGGGAA
AAAGCACCAA AGCCTTTCAA TGTCATCCCT CATTACTATA ACGAAAATGT CACCATGGAG AATCTCTGCA GACTTCATGG
CTGGGGAGTC CGGGAATATC CTAGACGTGT TTATGATGCT GTGTTGTTTA GTAATGAGTT GGAAATACTA ACCTTGCGAT
GGAGAGAACT GTACCCTTAC ATAACTGATT TTGTTCTCCT TGAATCAAAT TCTACGTTTA CCGGATTGCC CAAACCTCTG
GTTTTCCAAA GCAATAGGGA GCAGTTCAAA TTTATCGAGC CACGATTAAC TTATGGTACT ATTGGTGGGA GATTTAAGAA
GGGAGAAAAC CCATTTGTTG AGGAGGCATA TCAGCGTGTA GCATTGGACC AGCTCCTCAA GATAGCTGGT ATTAGTGATG
ATGACTTGTT GATTATGTCT GATGTGGATG AGATACCAAG CGCTCACACT ATTAATCTCC TGAGGTGGTG TGATGAAGTA
CCCTCAATCC TTCATCTGCA GCTGAAAAAC TATCTCTATT CATTTGAATT TCGCGTTGAT GATAAGAGTT GGAGGGCTTC
AATTCACAGG TATCAGACTG GGAAGACAAG GTATGCACAT TATCGCCAAT CTGATGACAT GCTGGCCGAT GCTGGCTGGC
ATTGTAGCTT TTGCTTCCGT CGGATCAGTG ATTTCATTTT TAAGATGAAA GCCTACAGCC ACTATGATAG AGTCAGATTC
TCTCACTATT TAAATCCTGA TAGAATTCAG AAGGTAATAT GCAAAGGTGC TGATTTGTTT GATATGCTGC CGGAGGAGTA
CACTTTCAAG GATATCATTG GCAAAATGGG ACCAATACCA CATTCCTATT CTGCAGTTCA TCTTCCTGCT TTTCTTCTGG
AAAATGCTGA GAAGTATAAA TTCCTTTTGC CTGGAAATTG CAAAAGAGAA AAATGA

[show][hide][copy]PROTEIN

>Vigan.01G090800.01
MWWMMGEAGG NYSSKKTDDL CSNVCGQESS QVSSMSRIRC ILRGLDVKTY IFMFAVVPMC IFGFYIHGQK ISYFLRPLWE
KAPKPFNVIP HYYNENVTME NLCRLHGWGV REYPRRVYDA VLFSNELEIL TLRWRELYPY ITDFVLLESN STFTGLPKPL
VFQSNREQFK FIEPRLTYGT IGGRFKKGEN PFVEEAYQRV ALDQLLKIAG ISDDDLLIMS DVDEIPSAHT INLLRWCDEV
PSILHLQLKN YLYSFEFRVD DKSWRASIHR YQTGKTRYAH YRQSDDMLAD AGWHCSFCFR RISDFIFKMK AYSHYDRVRF
SHYLNPDRIQ KVICKGADLF DMLPEEYTFK DIIGKMGPIP HSYSAVHLPA FLLENAEKYK FLLPGNCKRE K*