VIGGS:GBrowse

Vigan.01G092000.01

Basic Information:

Name:	Vigan.01G092000.01 Multiple alignment Variant Information
Position:	Chr01:7808593..7810097 (- strand)
Length:	1505

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KSX0, Glycine max]
GO:	Biological Process: translational elongation (GO:0006414)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L10/L12 (IPR001813)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:356.84,588.58,248.48,119.47,455.53,702.87,198.97,136.62
Arabidopsis thaliana homolog:	AT4G25890.1

Automatic updates:

Name:	NM_001248408 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527385 (LOC100527385), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:7808593..7808817 (- strand)
Length:	225
Type:	three_prime_UTR

Position:	Chr01:7808818..7808979 (- strand)
Length:	162
Type:	CDS

Position:	Chr01:7809778..7809975 (- strand)
Length:	198
Type:	CDS

Position:	Chr01:7809976..7810097 (- strand)
Length:	122
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G092000.01
ACGGCATTAG GGTTCCGAAA CCTCACTGGT ACATAAACGA TTCCTCTCAC ACAAATTGCT GTCACTGTAA TTTGCTCTTT
GCGAGTCTTT AGTTTCGAAT TAGGGTTTCG CACAGAGTCG CCATGGGAGT CTTCACATTT ATCGTACGCA ACTCCGGCGG
CGAATGGACA GCCAAACAAC ATTCCGGCGA TCTCGAGTCC TCCGCCGACT CCTCCTACGA ACTCCAACGG AAGCTTGTCC
AAGCCGCTCT CGCCGTTGAC TCCTCCGGCG GCGTTCAGTC CTCTTACTCT CCTGTTTCCC CTTCCTCTGC CATATTTCAG
GTAATAGTGG GTGGTGCAGT ATTTGTTGGA GGTGGTGCGG TTGCAGCTGC ACCTGCCGGA AGTGCTGCCC CAGCTGCTGA
TGCTGCCCCG GCCGCTGAGA AGAAGGAAGA AAAGGTGGAG GAAGAGTCCG ACGAGGATAT GGGTTTGGGT CTGTTTGATT
AGAGTTCTGT TTTTTGAGTT TTGATGGAAG AAATGTTTTA GTTTTAATCC TATAAATTAT ATTTGTGTAT TGCCTTTCGC
TATTTAATGC TACATTCAAC TCCATCAGAT AGACTTTTTG TTTTTCTGTG ATGTGACCTA AATCGTTCAT CTGTATCGGG
TTTTGCTAAT TATTTCCTTT TAAAAAATGC TCGCTCTTAA ATTTAATAGA GTGCTACGTT ACCTTCA

[show][hide][copy]CDS

>Vigan.01G092000.01
ATGGGAGTCT TCACATTTAT CGTACGCAAC TCCGGCGGCG AATGGACAGC CAAACAACAT TCCGGCGATC TCGAGTCCTC
CGCCGACTCC TCCTACGAAC TCCAACGGAA GCTTGTCCAA GCCGCTCTCG CCGTTGACTC CTCCGGCGGC GTTCAGTCCT
CTTACTCTCC TGTTTCCCCT TCCTCTGCCA TATTTCAGGT AATAGTGGGT GGTGCAGTAT TTGTTGGAGG TGGTGCGGTT
GCAGCTGCAC CTGCCGGAAG TGCTGCCCCA GCTGCTGATG CTGCCCCGGC CGCTGAGAAG AAGGAAGAAA AGGTGGAGGA
AGAGTCCGAC GAGGATATGG GTTTGGGTCT GTTTGATTAG

[show][hide][copy]PROTEIN

>Vigan.01G092000.01
MGVFTFIVRN SGGEWTAKQH SGDLESSADS SYELQRKLVQ AALAVDSSGG VQSSYSPVSP SSAIFQVIVG GAVFVGGGAV
AAAPAGSAAP AADAAPAAEK KEEKVEEESD EDMGLGLFD*