GBrowse Details

Vigan.01G093100.01

Basic Information:
Name: Vigan.01G093100.01
Multiple alignment
Variant Information
Position: Chr01:7888956..7892007 (+ strand)
Length: 3052
Functional Information:
Description: Similar to Cellulase protein. [XP_007044872.1, Theobroma cacao]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
InterPro: Ricin B lectin domain (IPR000772)
Glycoside hydrolase, family 5 (IPR001547)
Glycoside hydrolase, catalytic domain (IPR013781)
Glycoside hydrolase, superfamily (IPR017853)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.41,2.07,6.58,2.42,3.06,5.61,1.63,7.45
Arabidopsis thaliana homolog: AT1G13130.1, AT3G26130.1, AT3G26140.1, AT5G17500.1
Automatic updates:
Name: NM_001369316 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glycosyl hydrolase 5 family protein (LOC100790415), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:7888956..7889090 (+ strand)
Length: 135
Type: five_prime_UTR
Position: Chr01:7889091..7889507 (+ strand)
Length: 417
Type: CDS
Position: Chr01:7890062..7890309 (+ strand)
Length: 248
Type: CDS
Position: Chr01:7890457..7890977 (+ strand)
Length: 521
Type: CDS
Position: Chr01:7891259..7891755 (+ strand)
Length: 497
Type: CDS
Position: Chr01:7891756..7892007 (+ strand)
Length: 252
Type: three_prime_UTR


>Vigan.01G093100.01
TTTAAAACTC AATTTTGCCA CATCACTGAT CCCGCATCAT GTATATATTG GGTTGAACAA ACGTGCAGAG AATCTATAGT
GCAGAATATG ATGCGCATGT CATAGGCAAA CAAGACTAAA AATAGTTACA ACAAAATGGA ATTGCTCATT AAGATTCTCT
CTGCGCTAAT AATATTGTTC TCCGGAGGAC CCATACTTGA AGTTAGGCCC GTGGCAGTGA CGGCTCTCCC ACTCCGCACG
GATTCTCGAT GGATCGTGGG CCAAGATGGC CGAAGGGTAA AGCTGGCCTG TGTGAATTGG GTTTCCCACG TGGAAGCTGT
GGTGGCAGAA GGGCTCAGCA AAAAGCCCGT CGATAACATT TCCCAGGGAA TAAAGTCCAT GGGCTTCAAC TGTGTCAGGC
TCACTTGGCC CATACTTTTG GTGACAAACG ACTCTCTGGC TTCTCTCACC GTTAGACGCT CCTTTCAGAA CCTCGGCCTC
CTTGAATCCA TCGCCGGTGT CCAAACCAAC AACCCCTCCA TCATTGACCT TCCGCTCATC CAAGCTTTTC AGGCAGTGGT
GAAAAGTCTT GGAGATAACG ATGTGATGGT GATATTGGAC AACCACGTAA CGCAACCAGG GTGGTGTTGC AGTAATTCTG
ACGGGAATGG GTTTTTCGGT GACAAATTTT TTGACCCAAA TTTGTGGTTG TCGGGTCTGA CCAAGATGGC CACACTTTTC
AATGGGGTCA GTAATGTGGT GGGTATGAGC TTGAGGAACG AGCTCCGAGG ACCCAAACAG AATGTGGACG ATTGGTACAA
GTACATGGTG AAAGGAGCAG AAACAGTCCA TGCTGCAAAT CCAGATGTTC TTGTGATTCT ATCAGGCCTA AATTTTGACA
AGGACTTGTC ATTCATTCAA AAACGACAGG TGAACGTGAC ATTTAAGGAA AAATTAGTAT TTGAGGCTCA TTGGTATGGG
TTTACTGATG GTGAAGCTTG GGTGAATGGT AACCCAAACC AAGTATGTGG ACAAGTGGCT GGAAATTTCA TGAGAACCTC
TGGCTACTTG GTGAACCAAG GATGGCCTCT GATTATCAGT GAGTTTGGTG TAGACTTAAG AGGCACCAAC GTCAACGACA
ATCGCTACCT TAACTGCTTC TTAACAGTAG CAGCTGAGCA TGACTTGGAC TGGGCATTGT GGACACTCGT TGGAAGCTAC
TACTTTAGAC AAGGAGTTGT AGGAATGGAA GAGTTTTATG GCATTCTTAA TTGGGATTGG TCCCAAGTTA GGAATCTCAC
TTTCTTAAAC AGAATCTCTT CCCTCCAACT TCCTTTTCGA GGTCCTGGCA TAACAAAAGG CAATCCGTAC AAATTGATAT
ACCATCCCTC AACTGGGTTG TGTGTGATAA GAAAGACATT ACTAGAGCCA TTAACATTAG GACCTTGTTA TTTATCTGAA
GGTTGGAAAT ACACACCCCA AAAAATTCTG TCAATAAAGG GTACCTACTT CTGCATTGAA GCGGAGAGTG AAGGGATGGC
TGCCATGCTT GGGATAATAT GCTCAGATTC TAACTCTAGA TGGGAAATGA TCTCAGATTC CAAGTTGCAT CTTTCCTCTA
AACTCAGTGA TGGTTCTGAT GTATGCCTAG ATGTAGATGA CAACAATGTC ATTGTGACGA ATGCATGTAA ATGTTTGACC
AGAGATCGTT CATGCGACCC TAGTAGCCAG TGGTTCAAAC TTATTGACAG TGGAAGGAGG CCAATCTTCA CAAGCTCATC
ATCATCATCC ATGCAAAATT CATCGGACCT TTTATGGAAA CAATTGAGCT CAATATAAGT AGCTTGAATA AAATTATATA
TTATAAAATT GGACAATACT TCTCCATTTA ATATATACAT ATGTTTTTTT TTTTTCGTTT TTATCAGATC ATGTGTATCT
TATAGACTTT ATAACTTTCT TTCTCTTTGT ATATATAAGT TATCAGATGC TGATGAATAT CTTTCGTGTA CATAAACTAT
TTTCATATTG ATTTTCTTAA CCATATTGTA TTCGTTAAAT CTTCTAAGAA TCCTTCTCAT GTTTCAACGC 

>Vigan.01G093100.01
ATGGAATTGC TCATTAAGAT TCTCTCTGCG CTAATAATAT TGTTCTCCGG AGGACCCATA CTTGAAGTTA GGCCCGTGGC
AGTGACGGCT CTCCCACTCC GCACGGATTC TCGATGGATC GTGGGCCAAG ATGGCCGAAG GGTAAAGCTG GCCTGTGTGA
ATTGGGTTTC CCACGTGGAA GCTGTGGTGG CAGAAGGGCT CAGCAAAAAG CCCGTCGATA ACATTTCCCA GGGAATAAAG
TCCATGGGCT TCAACTGTGT CAGGCTCACT TGGCCCATAC TTTTGGTGAC AAACGACTCT CTGGCTTCTC TCACCGTTAG
ACGCTCCTTT CAGAACCTCG GCCTCCTTGA ATCCATCGCC GGTGTCCAAA CCAACAACCC CTCCATCATT GACCTTCCGC
TCATCCAAGC TTTTCAGGCA GTGGTGAAAA GTCTTGGAGA TAACGATGTG ATGGTGATAT TGGACAACCA CGTAACGCAA
CCAGGGTGGT GTTGCAGTAA TTCTGACGGG AATGGGTTTT TCGGTGACAA ATTTTTTGAC CCAAATTTGT GGTTGTCGGG
TCTGACCAAG ATGGCCACAC TTTTCAATGG GGTCAGTAAT GTGGTGGGTA TGAGCTTGAG GAACGAGCTC CGAGGACCCA
AACAGAATGT GGACGATTGG TACAAGTACA TGGTGAAAGG AGCAGAAACA GTCCATGCTG CAAATCCAGA TGTTCTTGTG
ATTCTATCAG GCCTAAATTT TGACAAGGAC TTGTCATTCA TTCAAAAACG ACAGGTGAAC GTGACATTTA AGGAAAAATT
AGTATTTGAG GCTCATTGGT ATGGGTTTAC TGATGGTGAA GCTTGGGTGA ATGGTAACCC AAACCAAGTA TGTGGACAAG
TGGCTGGAAA TTTCATGAGA ACCTCTGGCT ACTTGGTGAA CCAAGGATGG CCTCTGATTA TCAGTGAGTT TGGTGTAGAC
TTAAGAGGCA CCAACGTCAA CGACAATCGC TACCTTAACT GCTTCTTAAC AGTAGCAGCT GAGCATGACT TGGACTGGGC
ATTGTGGACA CTCGTTGGAA GCTACTACTT TAGACAAGGA GTTGTAGGAA TGGAAGAGTT TTATGGCATT CTTAATTGGG
ATTGGTCCCA AGTTAGGAAT CTCACTTTCT TAAACAGAAT CTCTTCCCTC CAACTTCCTT TTCGAGGTCC TGGCATAACA
AAAGGCAATC CGTACAAATT GATATACCAT CCCTCAACTG GGTTGTGTGT GATAAGAAAG ACATTACTAG AGCCATTAAC
ATTAGGACCT TGTTATTTAT CTGAAGGTTG GAAATACACA CCCCAAAAAA TTCTGTCAAT AAAGGGTACC TACTTCTGCA
TTGAAGCGGA GAGTGAAGGG ATGGCTGCCA TGCTTGGGAT AATATGCTCA GATTCTAACT CTAGATGGGA AATGATCTCA
GATTCCAAGT TGCATCTTTC CTCTAAACTC AGTGATGGTT CTGATGTATG CCTAGATGTA GATGACAACA ATGTCATTGT
GACGAATGCA TGTAAATGTT TGACCAGAGA TCGTTCATGC GACCCTAGTA GCCAGTGGTT CAAACTTATT GACAGTGGAA
GGAGGCCAAT CTTCACAAGC TCATCATCAT CATCCATGCA AAATTCATCG GACCTTTTAT GGAAACAATT GAGCTCAATA
TAA

>Vigan.01G093100.01
MELLIKILSA LIILFSGGPI LEVRPVAVTA LPLRTDSRWI VGQDGRRVKL ACVNWVSHVE AVVAEGLSKK PVDNISQGIK
SMGFNCVRLT WPILLVTNDS LASLTVRRSF QNLGLLESIA GVQTNNPSII DLPLIQAFQA VVKSLGDNDV MVILDNHVTQ
PGWCCSNSDG NGFFGDKFFD PNLWLSGLTK MATLFNGVSN VVGMSLRNEL RGPKQNVDDW YKYMVKGAET VHAANPDVLV
ILSGLNFDKD LSFIQKRQVN VTFKEKLVFE AHWYGFTDGE AWVNGNPNQV CGQVAGNFMR TSGYLVNQGW PLIISEFGVD
LRGTNVNDNR YLNCFLTVAA EHDLDWALWT LVGSYYFRQG VVGMEEFYGI LNWDWSQVRN LTFLNRISSL QLPFRGPGIT
KGNPYKLIYH PSTGLCVIRK TLLEPLTLGP CYLSEGWKYT PQKILSIKGT YFCIEAESEG MAAMLGIICS DSNSRWEMIS
DSKLHLSSKL SDGSDVCLDV DDNNVIVTNA CKCLTRDRSC DPSSQWFKLI DSGRRPIFTS SSSSSMQNSS DLLWKQLSSI
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