GBrowse Details

Vigan.01G101100.01

Basic Information:
Name: Vigan.01G101100.01
Multiple alignment
Variant Information
Position: Chr01:8560261..8564360 (- strand)
Length: 4100
Functional Information:
Description: Similar to uncharacterized protein. [C6TNQ7, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:95.74,47.49,13.36,24.85,18.17,12.13,13.39,15.73
Arabidopsis thaliana homolog: AT4G06634.1
Automatic updates:
Name: BT053011 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula clone MTYFL_FM_FN_FO1G-E-11 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: MK830056 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula transcription repressor MAIZE1 (TRM1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:8560261..8560492 (- strand)
Length: 232
Type: three_prime_UTR
Position: Chr01:8560493..8561032 (- strand)
Length: 540
Type: CDS
Position: Chr01:8561278..8561421 (- strand)
Length: 144
Type: CDS
Position: Chr01:8562030..8562119 (- strand)
Length: 90
Type: CDS
Position: Chr01:8562348..8562547 (- strand)
Length: 200
Type: CDS
Position: Chr01:8563485..8563543 (- strand)
Length: 59
Type: CDS
Position: Chr01:8564108..8564193 (- strand)
Length: 86
Type: CDS
Position: Chr01:8564194..8564360 (- strand)
Length: 167
Type: five_prime_UTR


>Vigan.01G101100.01
AATGTCTTCT CCCTTTAAGC CTGCGATAAC TCCTAGTGAA GAGGAAAAGC AAGAGAGGAA CCCATTATTG AGAAAATGCG
TCCCTGAAAA CAGCAAACCC TAAATCGAGA TAAAGGTTCG AAGAATTTGC GAAACGAAGT GAGTTTTGGC GCCGCAGTGA
ATCGTAGATG GAGATTCACT ACAGTAGCAG CTACTTCGAA AGACGTCCCA TTCTCAAGTC CAAGGCTCCC GCAGTTAAAT
GGGTTAAAGA ATGGGTTCCC CAAGATCTTG TAACAACTGG AGGAAAATGC ATGCTCTTAA AATGGGTAAC AGAGGATACC
TTGAAGACCT TAAAAGAAAA GACAACAGAG CCAACAATGC CTGAGCCAGA ACCAGAGCCA ACTACTGAAG TACTTTTTCT
TTGTAGCTAT GATGGATGTG GAAAGACATT CATAGATGCT GGTGCATTGA GGAAGCATTC TCACATCCAT GGAGAGAGGC
AATATGTCTG TCACTACGAG GGGTGTGGAA AGAAATTTCT GGATAGCTCA AAATTGAAAA GACATTTTCT CATTCATACA
GGGGAGAGGG ATTTTGTGTG TCCTCATGAA GGTTGTGGTA AGGCCTTTTC CTTGGATTTC AACTTAAGGT CTCACATGAA
AACACATTCC CAAGAGAACT ATCATATCTG CCCGTACCCA GATTGTGGAA AGAGATATGC TCACGAATAC AAACTAAAGA
ATCACATTGC ATCCCATCAT GAAAAGAATG CATCAGTGGA TGTGACAAAG TACACTACTC CACCTTCAGA GAAGCAAACA
AAAACTGCTA AATCGTCTGG AGGGGCATAT GGTTCTGCAT CATCCGACCG TCCCTATGCA TGTCCATATG ATGGGTGTGA
AAAGGCATAT ATCCATGAAT ACAAGCTTAG ACTTCATTTG AAGAGGGAAC ACCCGGGGAT GATGCCCGAT GAAAATGCTG
AGCATGCTCA GGCTAATAAT GTTGACAATG AAATGGATGA AGCAAGTGAC CAAGATGCCT ATATCGCGAA ACGGTCAAAT
GGTAAAATTC AGAAACAGAG TAGGCCTAAA CCAAGTCTTA AGTTGCCTCC TTCCAAAATT GCAAAACGCA AAGTGTCCAC
TCCCACTTTA ACTGTAAATA AAAATTCTTG GCCCGTGAAA GATGAACCTT TTGATGAAGA AGATAGTGAG GAAACAGAAG
AAGATCGTGA CAATGTTGAA GATGGTTGGA GATATACTGG AGGAAACAAT GAAGATGACG ATGAAGAAAC AGAATATGAA
GACTGAAAAT CAGTTATGGC AGCCTCTATG AAACTTGCTT GCGTAGAGAA ATATATTTTC TTTTTCTTCT ACAAAAAAAA
AATTCAGTTG TCTCTTTTTT ATTTGGCTAA GGAAATGGTG TTTTGTGAAA CTGAGTTGGC TATTTACATG CATTAGGAAG
GACTCCTAAC TATCTCTACC CGTCGCACGG GTTGTTTTTT TAAATAATTT TTATATCATA AGATTATATT TTAATTAA

>Vigan.01G101100.01
ATGGAGATTC ACTACAGTAG CAGCTACTTC GAAAGACGTC CCATTCTCAA GTCCAAGGCT CCCGCAGTTA AATGGGTTAA
AGAATGGGTT CCCCAAGATC TTGTAACAAC TGGAGGAAAA TGCATGCTCT TAAAATGGGT AACAGAGGAT ACCTTGAAGA
CCTTAAAAGA AAAGACAACA GAGCCAACAA TGCCTGAGCC AGAACCAGAG CCAACTACTG AAGTACTTTT TCTTTGTAGC
TATGATGGAT GTGGAAAGAC ATTCATAGAT GCTGGTGCAT TGAGGAAGCA TTCTCACATC CATGGAGAGA GGCAATATGT
CTGTCACTAC GAGGGGTGTG GAAAGAAATT TCTGGATAGC TCAAAATTGA AAAGACATTT TCTCATTCAT ACAGGGGAGA
GGGATTTTGT GTGTCCTCAT GAAGGTTGTG GTAAGGCCTT TTCCTTGGAT TTCAACTTAA GGTCTCACAT GAAAACACAT
TCCCAAGAGA ACTATCATAT CTGCCCGTAC CCAGATTGTG GAAAGAGATA TGCTCACGAA TACAAACTAA AGAATCACAT
TGCATCCCAT CATGAAAAGA ATGCATCAGT GGATGTGACA AAGTACACTA CTCCACCTTC AGAGAAGCAA ACAAAAACTG
CTAAATCGTC TGGAGGGGCA TATGGTTCTG CATCATCCGA CCGTCCCTAT GCATGTCCAT ATGATGGGTG TGAAAAGGCA
TATATCCATG AATACAAGCT TAGACTTCAT TTGAAGAGGG AACACCCGGG GATGATGCCC GATGAAAATG CTGAGCATGC
TCAGGCTAAT AATGTTGACA ATGAAATGGA TGAAGCAAGT GACCAAGATG CCTATATCGC GAAACGGTCA AATGGTAAAA
TTCAGAAACA GAGTAGGCCT AAACCAAGTC TTAAGTTGCC TCCTTCCAAA ATTGCAAAAC GCAAAGTGTC CACTCCCACT
TTAACTGTAA ATAAAAATTC TTGGCCCGTG AAAGATGAAC CTTTTGATGA AGAAGATAGT GAGGAAACAG AAGAAGATCG
TGACAATGTT GAAGATGGTT GGAGATATAC TGGAGGAAAC AATGAAGATG ACGATGAAGA AACAGAATAT GAAGACTGA

>Vigan.01G101100.01
MEIHYSSSYF ERRPILKSKA PAVKWVKEWV PQDLVTTGGK CMLLKWVTED TLKTLKEKTT EPTMPEPEPE PTTEVLFLCS
YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH
SQENYHICPY PDCGKRYAHE YKLKNHIASH HEKNASVDVT KYTTPPSEKQ TKTAKSSGGA YGSASSDRPY ACPYDGCEKA
YIHEYKLRLH LKREHPGMMP DENAEHAQAN NVDNEMDEAS DQDAYIAKRS NGKIQKQSRP KPSLKLPPSK IAKRKVSTPT
LTVNKNSWPV KDEPFDEEDS EETEEDRDNV EDGWRYTGGN NEDDDEETEY ED*