VIGGS:GBrowse

Vigan.01G102500.01

Basic Information:

Name:	Vigan.01G102500.01 Multiple alignment Variant Information
Position:	Chr01:8739093..8744623 (- strand)
Length:	5531

Functional Information:

Description:	Similar to Uncharacterized protein. [C6ZRP4, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.18,5.60,6.71,2.81,1.63,11.28,12.74
Arabidopsis thaliana homolog:	AT5G56460.1

Automatic updates:

Name:	NM_001252926 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable receptor-like protein kinase At5g56460-like (LOC100775722), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:8739093..8739400 (- strand)
Length:	308
Type:	three_prime_UTR

Position:	Chr01:8739401..8739786 (- strand)
Length:	386
Type:	CDS

Position:	Chr01:8739988..8740111 (- strand)
Length:	124
Type:	CDS

Position:	Chr01:8740668..8740804 (- strand)
Length:	137
Type:	CDS

Position:	Chr01:8742203..8742338 (- strand)
Length:	136
Type:	CDS

Position:	Chr01:8742979..8743277 (- strand)
Length:	299
Type:	CDS

Position:	Chr01:8744120..8744183 (- strand)
Length:	64
Type:	CDS

Position:	Chr01:8744184..8744623 (- strand)
Length:	440
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G102500.01
AAAAGATTGG TGGGTTTGCA TTATCAAAAA CATGCACCTT CTATGTGCGC ACTACCATCA AAGTGCACAA ACCCACATTT
TGAATCACTA CAACCCAGTC GATGTGGGCC CTTCCATCTT CCCCCATAGC CAAGCCAACA CCCACCTCAT CAACATCATT
GCCATCTCTG AATTATCCCC CACTCTTACC TTTCTGTCAC CAAAAGATAT GTCCCCTTTC ACATTTCATC ACAACACTTA
ACCATCTTGT TTTTCTCCTC TATACTTCCT TCCTTTTCTC ATTTCTCTCT CTGTTTCCTC CTAAATCTCA CCCTTGTTTC
TTCAGGAGTG AGATATCAAC ACACAAAAAA GAGAAAAAGG TAACAAAAGT TTGGTTTTTG TGATGAGGGG TTGGTAAAGG
AGCTGCTGCT GCTACAAAGG GTGTGTTTGG ATTTGGTATA ATGGGTAACT GCTGGTGTAG ATGGGAGTCA TCAGATTATA
GAGTCTCATC CAATGTAAAG TCAGAACAAA ACCAGGTAAC GAAGCAAAGG AATGATCATG ATAGCAAGTT GCCATCAAAC
CCTGAGGAAG TAGAAGACCT ACGGCGTGAC TCAGCTGCAA ATCCATTGAT TGTATTCACT TACGATGAGT TGAAGATAAT
CACTGCAAAT TTTAGGCCAG ATCGTGTGTT GGGGGGAGGA GGATTTGGAA GTGTGTACAA AGGGTTCATT TCTGAGGAGT
TAAGGCAGGG TCTTCCTACT CTTGCTGTAG CTGTTAAGGT TCATGATGGT GACAACAGTC ATCAAGGCCA CAGAGAATGG
CTGGCAGAAG TGATATTTTT GGGACAGCTT TCACATTCAA ATCTAGTGAA ATTAGTTGGA TACTGCTGCG AGGATGAACA
TAGAGTACTG ATATATGAGT ACATGTCTCG GGGAAGTGTG GAACACAACT TGTTCTCAAA AATCTTGCTT CCCATGCCAT
GGTCCATAAG AATGAAGATT GCATTTGGTG CAGCTAAGGG ACTTGCATTT CTCCATGAAG CAGAGAAACC TGTCATCTAT
CGTGATTTCA AGACATCAAA TATTTTATTG GACCAGGACT ACAATGCAAA ACTTTCTGAT TTTGGCCTTG CCAAGGATGG
ACCAGTTGGA GACAAATCAC ATGTTTCTAC TAGAGTAATG GGAACATATG GTTATGCAGC ACCTGAATAC ATAATGACAG
GTCATCTGAC TCCTAGAAGT GATGTTTACA GTTATGGGGT TGTTCTGCTT GAACTTCTGA CAGGAAGAAA ATCTTTAGAC
AAGTTAAGAC CTGCTAGAGA GCAGAATCTC ACAGAATGGG CTGTTCCTTT GCTGAAGGAA AAGAAGAAAT TTCTAAACAT
AATAGATCCA AGGTTGGATG GTGATTATCC GATTAAAGCA GTTCACAAGG CTGCAATGCT TGCATATCAT TGCTTGAACC
GCAATCCAAA AGCAAGGCCT CTGATGAGAG ATATTGTGGA CTCATTGGAG CCATTGCAGG CATACACAGA GGTTCCTGTT
GGAAAAACAG TGACCATAAT CAGTGAGGTT CCTGAATCTG GTTTGAAAAT GAAAGATGCA AAATGACTTT AAAGAGGGTG
TTGTTGTAGG TTCTCAGTTT CATTTCTCAT GTTCTTTTGG AGATAGTTTT TGCCATAACT TGTGTTTATA AACATGACAT
ATAGGCAATT TCATTTTGTT CTATCCCTTT CTTTGCTTTT CAACATGGTC TTCATATCAG TGCAACTGGA TTACTGTATG
AACTGATATT AATTTCAACA GAAACAACAC AACTCATAGC AGCAAAAATT ATATTATTAG CAGAATCTAA AACCTCGTTG
GAACCATATC AATTGAAGAC GTTCTCTATT ATTATTTTTA TTGACAGTAT TATG

[show][hide][copy]CDS

>Vigan.01G102500.01
ATGGGTAACT GCTGGTGTAG ATGGGAGTCA TCAGATTATA GAGTCTCATC CAATGTAAAG TCAGAACAAA ACCAGGTAAC
GAAGCAAAGG AATGATCATG ATAGCAAGTT GCCATCAAAC CCTGAGGAAG TAGAAGACCT ACGGCGTGAC TCAGCTGCAA
ATCCATTGAT TGTATTCACT TACGATGAGT TGAAGATAAT CACTGCAAAT TTTAGGCCAG ATCGTGTGTT GGGGGGAGGA
GGATTTGGAA GTGTGTACAA AGGGTTCATT TCTGAGGAGT TAAGGCAGGG TCTTCCTACT CTTGCTGTAG CTGTTAAGGT
TCATGATGGT GACAACAGTC ATCAAGGCCA CAGAGAATGG CTGGCAGAAG TGATATTTTT GGGACAGCTT TCACATTCAA
ATCTAGTGAA ATTAGTTGGA TACTGCTGCG AGGATGAACA TAGAGTACTG ATATATGAGT ACATGTCTCG GGGAAGTGTG
GAACACAACT TGTTCTCAAA AATCTTGCTT CCCATGCCAT GGTCCATAAG AATGAAGATT GCATTTGGTG CAGCTAAGGG
ACTTGCATTT CTCCATGAAG CAGAGAAACC TGTCATCTAT CGTGATTTCA AGACATCAAA TATTTTATTG GACCAGGACT
ACAATGCAAA ACTTTCTGAT TTTGGCCTTG CCAAGGATGG ACCAGTTGGA GACAAATCAC ATGTTTCTAC TAGAGTAATG
GGAACATATG GTTATGCAGC ACCTGAATAC ATAATGACAG GTCATCTGAC TCCTAGAAGT GATGTTTACA GTTATGGGGT
TGTTCTGCTT GAACTTCTGA CAGGAAGAAA ATCTTTAGAC AAGTTAAGAC CTGCTAGAGA GCAGAATCTC ACAGAATGGG
CTGTTCCTTT GCTGAAGGAA AAGAAGAAAT TTCTAAACAT AATAGATCCA AGGTTGGATG GTGATTATCC GATTAAAGCA
GTTCACAAGG CTGCAATGCT TGCATATCAT TGCTTGAACC GCAATCCAAA AGCAAGGCCT CTGATGAGAG ATATTGTGGA
CTCATTGGAG CCATTGCAGG CATACACAGA GGTTCCTGTT GGAAAAACAG TGACCATAAT CAGTGAGGTT CCTGAATCTG
GTTTGAAAAT GAAAGATGCA AAATGA

[show][hide][copy]PROTEIN

>Vigan.01G102500.01
MGNCWCRWES SDYRVSSNVK SEQNQVTKQR NDHDSKLPSN PEEVEDLRRD SAANPLIVFT YDELKIITAN FRPDRVLGGG
GFGSVYKGFI SEELRQGLPT LAVAVKVHDG DNSHQGHREW LAEVIFLGQL SHSNLVKLVG YCCEDEHRVL IYEYMSRGSV
EHNLFSKILL PMPWSIRMKI AFGAAKGLAF LHEAEKPVIY RDFKTSNILL DQDYNAKLSD FGLAKDGPVG DKSHVSTRVM
GTYGYAAPEY IMTGHLTPRS DVYSYGVVLL ELLTGRKSLD KLRPAREQNL TEWAVPLLKE KKKFLNIIDP RLDGDYPIKA
VHKAAMLAYH CLNRNPKARP LMRDIVDSLE PLQAYTEVPV GKTVTIISEV PESGLKMKDA K*