VIGGS:GBrowse

Vigan.01G106100.01

Basic Information:

Name:	Vigan.01G106100.01 Multiple alignment Variant Information
Position:	Chr01:9113412..9114614 (+ strand)
Length:	1203

Functional Information:

Description:	Similar to Os11g0133900 protein. [Q0IUU7, Oryza sativa subsp. japonica]
InterPro:	Complex 1 LYR protein (IPR008011)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:4.41,4.70,5.55,5.98,11.59,7.20,6.43,7.39
Arabidopsis thaliana homolog:	AT5G51960.1

Automatic updates:

Name:	NM_001249439 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500324 (LOC100500324), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:9113412..9113576 (+ strand)
Length:	165
Type:	five_prime_UTR

Position:	Chr01:9113577..9113786 (+ strand)
Length:	210
Type:	CDS

Position:	Chr01:9114167..9114280 (+ strand)
Length:	114
Type:	CDS

Position:	Chr01:9114281..9114614 (+ strand)
Length:	334
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G106100.01
AAACCTTCTT TGTTCTCTCC AGTCGAATTG CTTTCTTTTA TACCTCCCCA TCCTCTCATC ATTTAGTTCT AGTTTTTTTA
TTTATTTTCT GCTAATAAGA TTCCTAAATA TTTAAAATAT GGCATCCTGT GCAGGAAAGT AGATTGTGGA TACTGATAGA
AACAAATGAG ATCCGACACG GCTAGTATCT ATCGCCATCT TCTCAAGGCG GTCAAGAAAC ATATTGGGAA TGAAGAGAAC
AAGAGTCATT TTTTAAAATT TGTAACCTCG GAGTTCCGTA ACAACAAAAA TTTGTCTGAT GGTGTGGCTG TCCAACAGAA
AATAAAACTT GCTCGTGATT ATACTTTTCT TCTTAACAGT GTACACCATC AGAAGGATTT ACTTTTTTCA TACAATATTG
CCGTGGATAG ATCAGATGAA GTGAAAAGGA CTCTTGGAAA ATCTGCTTCA AGTGTTGGTC TTCAGCTTCC TGAGGTTTAT
CAGCCATAAT AATTTGTAGT TTGATTTTTG CATGCATGGA ACGTGACAGT GTACTGCTGC AGAGAAGGGG CAACTAGTGA
AGGTTGCTTT AGTTTTCCTT CATTATTGGT AATTACCAAC CCAGTAGATT TTACTTTGGC GACTGCTTTT TCTGAATGAA
AATTTGTTTT CGTATTATTT ATCCAGAACT CAAAAACTAG TGAAGAAAAA GAGGAAAGAG ACTCAGAGCT GATGAATAAA
TTATATGATT CACACATTGG TTATTTCTTT TTAATAACGA ACTCTATAGT CTGAGTGTGA TAAATATTTC CCTCTAATAA
AAAATTTCTT CCTGGTTTCT TAA

[show][hide][copy]CDS

>Vigan.01G106100.01
ATGAGATCCG ACACGGCTAG TATCTATCGC CATCTTCTCA AGGCGGTCAA GAAACATATT GGGAATGAAG AGAACAAGAG
TCATTTTTTA AAATTTGTAA CCTCGGAGTT CCGTAACAAC AAAAATTTGT CTGATGGTGT GGCTGTCCAA CAGAAAATAA
AACTTGCTCG TGATTATACT TTTCTTCTTA ACAGTGTACA CCATCAGAAG GATTTACTTT TTTCATACAA TATTGCCGTG
GATAGATCAG ATGAAGTGAA AAGGACTCTT GGAAAATCTG CTTCAAGTGT TGGTCTTCAG CTTCCTGAGG TTTATCAGCC
ATAA

[show][hide][copy]PROTEIN

>Vigan.01G106100.01
MRSDTASIYR HLLKAVKKHI GNEENKSHFL KFVTSEFRNN KNLSDGVAVQ QKIKLARDYT FLLNSVHHQK DLLFSYNIAV
DRSDEVKRTL GKSASSVGLQ LPEVYQP*