GBrowse Details

Vigan.01G106200.01

Basic Information:
Name: Vigan.01G106200.01
Multiple alignment
Variant Information
Position: Chr01:9115389..9116854 (+ strand)
Length: 1466
Functional Information:
Description: Similar to AWPM-19-like family protein. [XP_007025202.1, Theobroma cacao]
InterPro: AWPM-19-like (IPR008390)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,0.74,3.38,0.21,0.46,0.68,7.85,0.27
Automatic updates:
Name: NM_001248589 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527398 (LOC100527398), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:9115389..9115846 (+ strand)
Length: 458
Type: five_prime_UTR
Position: Chr01:9115847..9115973 (+ strand)
Length: 127
Type: CDS
Position: Chr01:9116073..9116292 (+ strand)
Length: 220
Type: CDS
Position: Chr01:9116380..9116425 (+ strand)
Length: 46
Type: CDS
Position: Chr01:9116514..9116603 (+ strand)
Length: 90
Type: CDS
Position: Chr01:9116604..9116854 (+ strand)
Length: 251
Type: three_prime_UTR


>Vigan.01G106200.01
AGAAACAGTG TAAGATTTTT TTAACTGGGA TTGGGGCCAG TGTTGTGAAT GAGAAGAGTG AAGGAGTGGA AAAGAATATG
ACTAGCCTCA CAGAACAAAC TACTGACAAC TATTAAGATG TTGCCTGTTG AGAAGGTATT ACAGTTAAAC AAACCATAAA
AGTATGAGGC AAGTATGAGG CAAGTAAGAA TCAGTCATAT TTAGATGTGA AGTGTGGCTA TGAAGCATCA TCTTTACAGA
CCTGCATGGA GCTTTTGAAC TAACTAGCAG CCTTGTCAAG AAAAGAACCC AAACTTCTGT TTTATCCATT TCAGATATTT
ATAGGAACTC TCATTTGTAC AAAACATATG CATCTCCTGC TCCTTGGATA GCCTTTCCTT CACTGCTTTT AAGGTTCCTT
AAATCCCATA GCATAACACT TTTCTTGTTC CCAGCACCCT TTTACTTATC TAGAAAACAT GGCTAATGAG CAAATGAAGC
CCATTGCCAC CCTTCTTTTG GTGTTGAACT TCTGCATGTA TGCCGTAGTT TTGGGCATTG GTGGATGGGC AATGAACAGA
GCAATAGATC ATGGTTTTAT CATAGGTCCA GAATTAAAAC TGCCAGCACA CTTTTCACCC TTATTCTTCC CAATGGGAAA
TGCTTCCACT GGATTCTTTG TAACATTTGC TTTGCTTGCT GGAGTGGTTG GTGCTGCATC AGCAATATCA GGAATCACTC
ATATCCGGTC GTGGACTGCT GAGAGCTTAC CATCTGCAGC TTCAGTTGCT ACCATGGCTT GGACTCTTAC ACTCTTGGCC
ATGGGCTTTG CTTGGAAAGA GATTGGACTT CGTGTAAGAA ATGCACGTCT GAAAACAATG GAGTCTTTTA TAATTATACT
TTCAGCTACA CAGCTTTTCT ACATATTTGC CATTCATAGT GCTGCTGCAT ACAGAAGATA AAACGGAAGG TTGAGGGAAT
ATGGTGGTGG TGGTGGTTTT CTTTTTTCTT TTTTTTCCTT TTTTTGCTAT GAAGGCTTGT ATTGGTGTGC TTGTATTTTT
CTCTTCCATT TCTTTCTTTT TCTGCTCAAA GGAAAATTAG CATCAGAGTG TGGTTTGAAT GATTGGAATT GTATGAATCA
ATAATACATC ATTTACAAGA GCAATAAAGG AGAACATGCT CCCTTTTAAG TTATTTCAAA CCGTCCTTTT CA

>Vigan.01G106200.01
ATGGCTAATG AGCAAATGAA GCCCATTGCC ACCCTTCTTT TGGTGTTGAA CTTCTGCATG TATGCCGTAG TTTTGGGCAT
TGGTGGATGG GCAATGAACA GAGCAATAGA TCATGGTTTT ATCATAGGTC CAGAATTAAA ACTGCCAGCA CACTTTTCAC
CCTTATTCTT CCCAATGGGA AATGCTTCCA CTGGATTCTT TGTAACATTT GCTTTGCTTG CTGGAGTGGT TGGTGCTGCA
TCAGCAATAT CAGGAATCAC TCATATCCGG TCGTGGACTG CTGAGAGCTT ACCATCTGCA GCTTCAGTTG CTACCATGGC
TTGGACTCTT ACACTCTTGG CCATGGGCTT TGCTTGGAAA GAGATTGGAC TTCGTGTAAG AAATGCACGT CTGAAAACAA
TGGAGTCTTT TATAATTATA CTTTCAGCTA CACAGCTTTT CTACATATTT GCCATTCATA GTGCTGCTGC ATACAGAAGA
TAA

>Vigan.01G106200.01
MANEQMKPIA TLLLVLNFCM YAVVLGIGGW AMNRAIDHGF IIGPELKLPA HFSPLFFPMG NASTGFFVTF ALLAGVVGAA
SAISGITHIR SWTAESLPSA ASVATMAWTL TLLAMGFAWK EIGLRVRNAR LKTMESFIII LSATQLFYIF AIHSAAAYRR
*