GBrowse Details

Vigan.01G106400.01

Basic Information:
Name: Vigan.01G106400.01
Multiple alignment
Variant Information
Position: Chr01:9126410..9136370 (+ strand)
Length: 9961
Functional Information:
Description: Similar to Uncharacterized protein. [I1KSJ8, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Src homology-3 domain (IPR001452)
Arfaptin homology (AH) domain/BAR domain (IPR027267)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.94,2.65,7.76,6.39,9.46,6.00,13.99,9.51
Arabidopsis thaliana homolog: AT4G18060.1
Automatic updates:
Name: NM_001255796 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max rho GTPase-activating protein gacP-like (LOC100802256), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:9126410..9126601 (+ strand)
Length: 192
Type: five_prime_UTR
Position: Chr01:9126602..9126661 (+ strand)
Length: 60
Type: CDS
Position: Chr01:9127062..9127184 (+ strand)
Length: 123
Type: CDS
Position: Chr01:9127772..9127841 (+ strand)
Length: 70
Type: CDS
Position: Chr01:9127987..9128132 (+ strand)
Length: 146
Type: CDS
Position: Chr01:9129153..9129254 (+ strand)
Length: 102
Type: CDS
Position: Chr01:9134971..9135168 (+ strand)
Length: 198
Type: CDS
Position: Chr01:9135266..9135328 (+ strand)
Length: 63
Type: CDS
Position: Chr01:9135466..9135555 (+ strand)
Length: 90
Type: CDS
Position: Chr01:9135677..9135751 (+ strand)
Length: 75
Type: CDS
Position: Chr01:9135850..9135969 (+ strand)
Length: 120
Type: CDS
Position: Chr01:9135970..9136370 (+ strand)
Length: 401
Type: three_prime_UTR


>Vigan.01G106400.01
ATCGGATATT AGTAAAAAGT GAAGAAAGAA AATAATATTT TAGAAATAGA GAGAGGAACA TAATTCTAGT TGATTGACTG
GGCTGAGCTG GGGTTCTCAG AAAAACATTT GATTTGGATC TGATTTGGTA CTTTGATTGT TCCCTTTGAT TTTCAGAAGT
AAGATTAGAG AGCATAGCAG AAAGTAACCT CCATGGACGC TTTGAGGAAA CAAGCCACCA AGTTCAGAGA GCAAGTTGCC
AAACAGCAAC AGGCTGTAAT AAAGCAGTTC AGCAGTAGTG GTTATGAGAG CTCAGATGTT GTGGTCATTG ATGAGGTCGA
AATGCAGAGA CATCAACAGC TGGAAAAGCT GTATAGGGCC ACACGTTCAG GGAAGGACTT CCAGAAAGAA ATTGTTAAAG
CAGCCGAAAC TTTTACAGCT ATAGGTTACA AGCATATTGA GACAGGAACA AAACTTTCTG AGGATTGCTG TAAATATGGA
GCAGAGAACA ACAGTGAGAA TATATTAGCT AAGGCTGCAT CTGTATATGG TGATGCCCGG AAGCATGTAG AAAAGGAGCA
TGAAGAGTTA AATCGGCTTC TATCTACTCA GGTGTTAGAT CCTTTGAGGC AAATGATCAA TGGTGCACCT TTGGAGGATG
CGCGCCATCT TGGTCAACGG TATAGTCGAA TGAGACAAGA AGCAGAGGCA CTGAGGGAAG AGATTGTTAG AAGAAAAATA
CGGGTTCGGG AATCTCAAAC TGCTGAACAC GTAGCCAAAC TGCATGCTGC GGAAGCAAAG ATGCAGGAGC TGAAAGCAAA
CATGGCAGTT CTAGGTAAAG AAGCTTCAGC TGCATTGGCT GCCGTTGAAG CACAGCAGCA GAGACTTACT TTTCAAAGGC
TTGTTGCCAT GGTTGAAGGA GAAAAGACTT TCCATTTAAG AGTTGCAGCT ATTCTTGGTG AAATTGAAGC TGAGATGGTC
TCAGACAGAC AGAAGAAAGA ATCTGCTCCT CCAGTGACTA TTTCTGAGAA TGGCTCCGAG AAAACTATGT ACTTCTTGGC
TGAAGCAACG CATCCCTTCA GTGCTGAATC AGAAAAGGAA CTGAGTTTTT CAAAGGGCGA TTTTGTGGTT GTGCGAAAGG
TGAACCCTTC AGGGTGGTCA GAAGGAGAAT GCAATGGTAG AGCAGGATGG TTTCCTTCTG CATATGTGGA GAAAAGACAA
AGAATCCCCT CTAGCAATTC AGCCAGTGAA GTTTTCTAGA TTCTACTCAT CTTTTTGCTA TTCATTCTTT ATTTCCCATA
TTGGTTTTTG CACTATTGTT CAAATTTGGA TAAGCAAAAG GGGTAGGAAA AGGATAGTGA AATTGATGGA AGTGTTACCC
CAGAATGAAT AGAAAGAAAA AAGGGTGTTA AGCTGTGGGG TAAGATACAT GTGGTCTGTC CTTCCTCAAG GGTGATACTT
GACACTAGCT TTGCAGACAG TTTTTCCATA TATATGTATA TTTTTTACTT TTCGGCTGCA GACACAGATT TCCTTTTGCT
TCTGTATTCA AATTGATTGA TTGAAAAACA TGTCTTTGTT GATATCATTT CATTTTTGTG GTAGTACTTA TTGGAAGAAT
GAAGATAAGA TTTGAATTTT GTACAATCCC AAGGTATCCC 

>Vigan.01G106400.01
ATGGACGCTT TGAGGAAACA AGCCACCAAG TTCAGAGAGC AAGTTGCCAA ACAGCAACAG GCTGTAATAA AGCAGTTCAG
CAGTAGTGGT TATGAGAGCT CAGATGTTGT GGTCATTGAT GAGGTCGAAA TGCAGAGACA TCAACAGCTG GAAAAGCTGT
ATAGGGCCAC ACGTTCAGGG AAGGACTTCC AGAAAGAAAT TGTTAAAGCA GCCGAAACTT TTACAGCTAT AGGTTACAAG
CATATTGAGA CAGGAACAAA ACTTTCTGAG GATTGCTGTA AATATGGAGC AGAGAACAAC AGTGAGAATA TATTAGCTAA
GGCTGCATCT GTATATGGTG ATGCCCGGAA GCATGTAGAA AAGGAGCATG AAGAGTTAAA TCGGCTTCTA TCTACTCAGG
TGTTAGATCC TTTGAGGCAA ATGATCAATG GTGCACCTTT GGAGGATGCG CGCCATCTTG GTCAACGGTA TAGTCGAATG
AGACAAGAAG CAGAGGCACT GAGGGAAGAG ATTGTTAGAA GAAAAATACG GGTTCGGGAA TCTCAAACTG CTGAACACGT
AGCCAAACTG CATGCTGCGG AAGCAAAGAT GCAGGAGCTG AAAGCAAACA TGGCAGTTCT AGGTAAAGAA GCTTCAGCTG
CATTGGCTGC CGTTGAAGCA CAGCAGCAGA GACTTACTTT TCAAAGGCTT GTTGCCATGG TTGAAGGAGA AAAGACTTTC
CATTTAAGAG TTGCAGCTAT TCTTGGTGAA ATTGAAGCTG AGATGGTCTC AGACAGACAG AAGAAAGAAT CTGCTCCTCC
AGTGACTATT TCTGAGAATG GCTCCGAGAA AACTATGTAC TTCTTGGCTG AAGCAACGCA TCCCTTCAGT GCTGAATCAG
AAAAGGAACT GAGTTTTTCA AAGGGCGATT TTGTGGTTGT GCGAAAGGTG AACCCTTCAG GGTGGTCAGA AGGAGAATGC
AATGGTAGAG CAGGATGGTT TCCTTCTGCA TATGTGGAGA AAAGACAAAG AATCCCCTCT AGCAATTCAG CCAGTGAAGT
TTTCTAG

>Vigan.01G106400.01
MDALRKQATK FREQVAKQQQ AVIKQFSSSG YESSDVVVID EVEMQRHQQL EKLYRATRSG KDFQKEIVKA AETFTAIGYK
HIETGTKLSE DCCKYGAENN SENILAKAAS VYGDARKHVE KEHEELNRLL STQVLDPLRQ MINGAPLEDA RHLGQRYSRM
RQEAEALREE IVRRKIRVRE SQTAEHVAKL HAAEAKMQEL KANMAVLGKE ASAALAAVEA QQQRLTFQRL VAMVEGEKTF
HLRVAAILGE IEAEMVSDRQ KKESAPPVTI SENGSEKTMY FLAEATHPFS AESEKELSFS KGDFVVVRKV NPSGWSEGEC
NGRAGWFPSA YVEKRQRIPS SNSASEVF*