VIGGS:GBrowse

Vigan.01G106600.01

Basic Information:

Name:	Vigan.01G106600.01 Multiple alignment Variant Information
Position:	Chr01:9146303..9147762 (- strand)
Length:	1460

Functional Information:

Description:	Similar to Xyloglucan endotransglucosylase/hydrolase. [V7CQH5, Phaseolus vulgaris]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: cellular glucan metabolic process (GO:0006073)
	Cellular Component: cell wall (GO:0005618)
	Cellular Component: apoplast (GO:0048046)
	Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
	Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro:	Glycoside hydrolase, family 16 (IPR000757)
	Glycoside hydrolase, family 16, active site (IPR008263)
	Beta-glucanase (IPR008264)
	Concanavalin A-like lectin/glucanases superfamily (IPR008985)
	Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.81,0.26,0.00,0.00,0.06,0.00,0.68,0.02

Automatic updates:

Name:	NM_001370637 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 16 (LOC106798869), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:9146303..9146417 (- strand)
Length:	115
Type:	three_prime_UTR

Position:	Chr01:9146418..9146826 (- strand)
Length:	409
Type:	CDS

Position:	Chr01:9147001..9147194 (- strand)
Length:	194
Type:	CDS

Position:	Chr01:9147420..9147704 (- strand)
Length:	285
Type:	CDS

Position:	Chr01:9147705..9147762 (- strand)
Length:	58
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G106600.01
AAAAGCTCCA TATTAAGAGA CTATCTTCTC ACACTTCAAA TAAGATTTTC AACAAAATAT GGCAATACGT GAGACATTTC
TGAGAGTTTC AGCTCCATTG CTGGCCTATC ACTTGATGTG TCTCTTTGGA GTCATTGCTG AGGGTAATTT CTATGAAGAC
ATTGCCATCA CTTGGGGTGA ACAAGGTGGT CTGAAGATAC TAGGTAGCAA CTTTCTCATG CTTTCTCTAG ACCAGTTGTC
TGGCTCTGGC TTCCGATCCA AGGCAGAATA TCTGTATGGA AGAATAGACA TGCAGATTAA GCTTGTCTCT GGTAACTCAG
CTGGCACAGT CACTGCATAT TATTTATCTT CAGAAGGGCC AAATCATGAT GAGATAGATT TTGAGTTCTT GGGAAACATC
ACTGGAGAGC CCTACATAGT CCACACCAAT ATCTACACCC AAGGTATAGG CAATAGAGAA CAGCAATTCT ATCTTTGGTT
TGACCCCACA AAGCATTTTC ACACTTACAC AATTGTATGG AACCCTCAGC GCATCATTTT TTTGGTAGAT AACATCCCTA
TTAGAGTCTT CAACAACTAT GAATCCAGGG GAGTTCCATT TGCTAGCAAC CAGCCCATGA GGCTGTACTC CAGTCTATGG
TGTGCAGACC AGTGGGCAAC AAGAGGAGGG CTTGTGAAAA CCAATTGGTC CTATGCTCCT TTCAAAGCTT ACTATAGGAA
CTTTGATGCT AAAGCATGTG TGTGGTCCAA AGGATCATCT TCCTGTCCTT CAAACTCAGT TGCCACTATT CATAATAATA
CTTGGCAAGT TCATGATTTG GATGCTTATG GTAGAAGAAG TCTGAGATGG GTGCAAAAGT ATTACATGAT TTATAACTAC
TGCACAGATT ACAAGCGATT TCCTCAAGGT CGACCTCGTG AATGCAAGCT TTCTAGATTC TCTTGAGTGT GGAATAAGTA
ATTTTAGATA AATTTGATTC TTTCAGTTTG AGTATTTAAA TGTTCCACTC AAATACACAG TTGAATTTGA GTTCAATTTA
ATTTACTTTT GCTTGCTTGA A

[show][hide][copy]CDS

>Vigan.01G106600.01
ATGGCAATAC GTGAGACATT TCTGAGAGTT TCAGCTCCAT TGCTGGCCTA TCACTTGATG TGTCTCTTTG GAGTCATTGC
TGAGGGTAAT TTCTATGAAG ACATTGCCAT CACTTGGGGT GAACAAGGTG GTCTGAAGAT ACTAGGTAGC AACTTTCTCA
TGCTTTCTCT AGACCAGTTG TCTGGCTCTG GCTTCCGATC CAAGGCAGAA TATCTGTATG GAAGAATAGA CATGCAGATT
AAGCTTGTCT CTGGTAACTC AGCTGGCACA GTCACTGCAT ATTATTTATC TTCAGAAGGG CCAAATCATG ATGAGATAGA
TTTTGAGTTC TTGGGAAACA TCACTGGAGA GCCCTACATA GTCCACACCA ATATCTACAC CCAAGGTATA GGCAATAGAG
AACAGCAATT CTATCTTTGG TTTGACCCCA CAAAGCATTT TCACACTTAC ACAATTGTAT GGAACCCTCA GCGCATCATT
TTTTTGGTAG ATAACATCCC TATTAGAGTC TTCAACAACT ATGAATCCAG GGGAGTTCCA TTTGCTAGCA ACCAGCCCAT
GAGGCTGTAC TCCAGTCTAT GGTGTGCAGA CCAGTGGGCA ACAAGAGGAG GGCTTGTGAA AACCAATTGG TCCTATGCTC
CTTTCAAAGC TTACTATAGG AACTTTGATG CTAAAGCATG TGTGTGGTCC AAAGGATCAT CTTCCTGTCC TTCAAACTCA
GTTGCCACTA TTCATAATAA TACTTGGCAA GTTCATGATT TGGATGCTTA TGGTAGAAGA AGTCTGAGAT GGGTGCAAAA
GTATTACATG ATTTATAACT ACTGCACAGA TTACAAGCGA TTTCCTCAAG GTCGACCTCG TGAATGCAAG CTTTCTAGAT
TCTCTTGA

[show][hide][copy]PROTEIN

>Vigan.01G106600.01
MAIRETFLRV SAPLLAYHLM CLFGVIAEGN FYEDIAITWG EQGGLKILGS NFLMLSLDQL SGSGFRSKAE YLYGRIDMQI
KLVSGNSAGT VTAYYLSSEG PNHDEIDFEF LGNITGEPYI VHTNIYTQGI GNREQQFYLW FDPTKHFHTY TIVWNPQRII
FLVDNIPIRV FNNYESRGVP FASNQPMRLY SSLWCADQWA TRGGLVKTNW SYAPFKAYYR NFDAKACVWS KGSSSCPSNS
VATIHNNTWQ VHDLDAYGRR SLRWVQKYYM IYNYCTDYKR FPQGRPRECK LSRFS*