GBrowse Details

Vigan.01G107200.01

Basic Information:
Name: Vigan.01G107200.01
Multiple alignment
Variant Information
Position: Chr01:9197679..9200191 (+ strand)
Length: 2513
Functional Information:
Description: Similar to GDSL esterase/lipase At1g29670-like. [XP_004504253.1, Cicer arietinum]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.72,11.97,71.40,9.72,0.00,106.43,0.08,16.77
Arabidopsis thaliana homolog: AT1G29670.1
Automatic updates:
Name: NM_001255424 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase family protein (LOC100777335), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255437 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase At5g45670-like (LOC100800635), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:9197679..9197774 (+ strand)
Length: 96
Type: five_prime_UTR
Position: Chr01:9197775..9198021 (+ strand)
Length: 247
Type: CDS
Position: Chr01:9198747..9198871 (+ strand)
Length: 125
Type: CDS
Position: Chr01:9198947..9199192 (+ strand)
Length: 246
Type: CDS
Position: Chr01:9199295..9199550 (+ strand)
Length: 256
Type: CDS
Position: Chr01:9199642..9199865 (+ strand)
Length: 224
Type: CDS
Position: Chr01:9199866..9200191 (+ strand)
Length: 326
Type: three_prime_UTR


>Vigan.01G107200.01
CTTCCACATT CAATTACTCA CACATGCTAT CTTCCATAGC TACCTAGTTT CACTCTTTCC ACTTCCTCAC AAGTCAAACC
CACCGTTTCT TGCTCAATGG CAGCCTTAGA TCTCACAACT ACAACCATCT TGGCACTGCT TGTGGTTCTT GGCTTTTGCA
GTGGAGTTCA TGCTGCACCA CAAGTGCCAT GCTACTTCAT TTTTGGTGAT TCCTTGGTTG ATAATGGGAA CAACAACGAG
CTTCAATCTT TGGCTAGGGC TGATTACCTA CCTTATGGGA TTGACTTCCC TGGTGGACCT TCTGGGAGGT TTTCCAATGG
GAAAACCACT GTTGATGGAA TTGCTGAACT CTTGGGATTC GATGATTTGA TACCTTCATA TGCTGAAGTT AGTGGCGATG
ATATACTTAA AGGAGTGAAT TATGCATCTG CTGCTGCTGG AATTAGAGAG GAAACTGGAC AGCAACTGGG AGCACGCATT
AGTTTTAGTG GGCAGGTGCA AAATTATCAA AGCACAGTGA ACCAAGTGGT ATCTTTACTA GGAAATGAGG ACTCAGCTGC
AAATTACTTG AGCAAGTGCA TATATTCAAT TGGGTTGGGT AGCAATGATT ATCTAAACAA CTATTTCATG CCTCAATTCT
ATTCAAGCAG CAGGGAGTAC ACACCAGATC AGTTTGCAGA TGCTCTTATT AATGCATATA CTGATCAACT AAAAACTTTG
TACAACTATG GAGCAAGAAA AATGGTGCTG TTTGGAATAG GCCAAATAGG TTGCAGCCCA AATGAGTTGG CCAGAAACAG
CCCAGATGGT AAAACATGCG TTGACAGAAT CAATGTTGCA AACCAAATGT TCAACAACAA ATTGAAAGGT CTCACTGACC
AATTCAACAG CCAGATGCCT GATGCAAGAG TCATCTACAT AAATTCTTAT GGTATCTTTC AAGATATTAT AAGCAACCCT
GCAGCCTTTG GTTTCAGTGT CATCAATGCT GGGTGTTGCG GGGTAGGAAG GAACAATGGT CAAATTACAT GTCTGCCAAT
GCAAACTCCA TGCCCAAACA GAAGAGAATA CTTGTTCTGG GATGCTTTTC ATCCTACTGA GGCTGGAAAT CTAATTGTAG
CTCAAAGAGC ATACAATGCT CAATCTGCAT CAGATGCTTA CCCTATGGAT ATCCAACACT TAGCTCAGAT CTGATCTCTA
AGATGAACAT GGTCTAGTGG GGCAGTGGCC ATAAGCTGTG CTACAACCAC ATCTAATGTT CTTGGAATGC GTTATTTATT
TCTTTTGAGT CATAAGAGTC TTGAGTTTTC TCTCATCTTT TTCTTACATA TTCATATATG CTAAGTGTTC ACGTGGATTC
ATGTGTAATT GTGACCAAGC TTTGGAAGAT TGCTTATTTA ATTACAGTGA ATAATCTGTT GTAGCTTATG GATACACATT
GTGAAAGTTT CTCTGTGAAT GATTCAGAGA TAGTTCACAA GAGTCTTACT TTTGAAATGA CATTCATGGC ATTAAGAAAA


>Vigan.01G107200.01
ATGGCAGCCT TAGATCTCAC AACTACAACC ATCTTGGCAC TGCTTGTGGT TCTTGGCTTT TGCAGTGGAG TTCATGCTGC
ACCACAAGTG CCATGCTACT TCATTTTTGG TGATTCCTTG GTTGATAATG GGAACAACAA CGAGCTTCAA TCTTTGGCTA
GGGCTGATTA CCTACCTTAT GGGATTGACT TCCCTGGTGG ACCTTCTGGG AGGTTTTCCA ATGGGAAAAC CACTGTTGAT
GGAATTGCTG AACTCTTGGG ATTCGATGAT TTGATACCTT CATATGCTGA AGTTAGTGGC GATGATATAC TTAAAGGAGT
GAATTATGCA TCTGCTGCTG CTGGAATTAG AGAGGAAACT GGACAGCAAC TGGGAGCACG CATTAGTTTT AGTGGGCAGG
TGCAAAATTA TCAAAGCACA GTGAACCAAG TGGTATCTTT ACTAGGAAAT GAGGACTCAG CTGCAAATTA CTTGAGCAAG
TGCATATATT CAATTGGGTT GGGTAGCAAT GATTATCTAA ACAACTATTT CATGCCTCAA TTCTATTCAA GCAGCAGGGA
GTACACACCA GATCAGTTTG CAGATGCTCT TATTAATGCA TATACTGATC AACTAAAAAC TTTGTACAAC TATGGAGCAA
GAAAAATGGT GCTGTTTGGA ATAGGCCAAA TAGGTTGCAG CCCAAATGAG TTGGCCAGAA ACAGCCCAGA TGGTAAAACA
TGCGTTGACA GAATCAATGT TGCAAACCAA ATGTTCAACA ACAAATTGAA AGGTCTCACT GACCAATTCA ACAGCCAGAT
GCCTGATGCA AGAGTCATCT ACATAAATTC TTATGGTATC TTTCAAGATA TTATAAGCAA CCCTGCAGCC TTTGGTTTCA
GTGTCATCAA TGCTGGGTGT TGCGGGGTAG GAAGGAACAA TGGTCAAATT ACATGTCTGC CAATGCAAAC TCCATGCCCA
AACAGAAGAG AATACTTGTT CTGGGATGCT TTTCATCCTA CTGAGGCTGG AAATCTAATT GTAGCTCAAA GAGCATACAA
TGCTCAATCT GCATCAGATG CTTACCCTAT GGATATCCAA CACTTAGCTC AGATCTGA

>Vigan.01G107200.01
MAALDLTTTT ILALLVVLGF CSGVHAAPQV PCYFIFGDSL VDNGNNNELQ SLARADYLPY GIDFPGGPSG RFSNGKTTVD
GIAELLGFDD LIPSYAEVSG DDILKGVNYA SAAAGIREET GQQLGARISF SGQVQNYQST VNQVVSLLGN EDSAANYLSK
CIYSIGLGSN DYLNNYFMPQ FYSSSREYTP DQFADALINA YTDQLKTLYN YGARKMVLFG IGQIGCSPNE LARNSPDGKT
CVDRINVANQ MFNNKLKGLT DQFNSQMPDA RVIYINSYGI FQDIISNPAA FGFSVINAGC CGVGRNNGQI TCLPMQTPCP
NRREYLFWDA FHPTEAGNLI VAQRAYNAQS ASDAYPMDIQ HLAQI*