VIGGS:GBrowse

Vigan.01G108100.01

Basic Information:

Name:	Vigan.01G108100.01 Multiple alignment Variant Information
Position:	Chr01:9573246..9575660 (+ strand)
Length:	2415

Functional Information:

Description:	Similar to Heat shock transcription factor. [Q940V6, Phaseolus acutifolius]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:28.98,17.24,3.15,5.73,6.45,2.58,9.73,4.51
Arabidopsis thaliana homolog:	AT4G18880.1

Automatic updates:

Name:	NM_001353428 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 13 (HSF-13), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:9573246..9574073 (+ strand)
Length:	828
Type:	five_prime_UTR

Position:	Chr01:9574074..9574289 (+ strand)
Length:	216
Type:	CDS

Position:	Chr01:9574416..9575408 (+ strand)
Length:	993
Type:	CDS

Position:	Chr01:9575409..9575660 (+ strand)
Length:	252
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G108100.01
TAAGATCTTA GTATTTCAAT TTGTTTTTCT GAATTCAAGT ATAATATTAT CAGATATTAT TCCTAGTTCT TGCTTTATTA
CATCTCCACT TGCATTGTTC ACTTTTATTT TCGTTGTTAA TCCTTTGGTA CCCTTCCTTT CTCAAATCAA ACACGCGTTG
ACCCTCGTTC AACCCCAAAA ACAAAACTGG AAATTGAAGA AAGGATCCGA GCAATTAGAA ATTTGGAATC ACCCAGAAAC
AGAAGGAGCC CTTCTTTTTC TTCTCTGCGA TTTCTCTGCT CTCTCTCCCT CCCCGTCTTC AGGTGCAAAG CTCCAATAGC
GTAATTGCCA TTTTTCTTTT ATATAATTTA ATTACTGTTG CTTTACGTGC AAGCTTCTTC AATTTTCCCA TCCAGGGAAA
GAAGAATACT ACTTTAACAT ATTTGGGGAA ATTCAACCCA CGATTCTTCT GTAAAATTTG TCCGAGAATA ATCGTTGTTT
GTCTGGGTAT TTGGGGTTAG CAGAGGAGAG AAAGTTGAAA ACTTTTTCTG CCTCGTGGTT TTGTTGATAT AATGGGTCAT
GGGTTGTTCT CCTTTGGCAA ATGGGGTTTT GCAATAATTG GCTATTATTA ATTTTGCTGA AAGTGGGAAT TTTATGTTAT
TGGATTTTGT CTGGGTCAGA TTTGGGAAGA AAAAAAAGGT TATTTTTTGG TGGGAGGTTC TATGGAATGC CCCATTGGGG
ATTAAGGGTT GACTTCTTTT GAAAGTTTGG AGTTTGATTT TGTGTTTGGG TTTTGAATCT GGGAGGCTGA GATTTGTGAG
TGGGGTTGAT TGAAGTTTGG TTTGAGTGAT GGATGAGGCA CTGGGTAGTT CATGTTCCCT GCCCCCTTTC CTGGCGAAGA
CTTATGAGAT GGTTGATGAT CCTTCCACGA ATTCAATTGT TTCGTGGAGT GCCTCTAGTA AAAGTTTCGT TGTGTGGAAT
CCTCCAGAAT TTGCTAGGGA TTTGCTGCCT AGATTCTTTA AGCACAACAA TTTCTCAAGT TTCATCAGGC AGCTCAACAC
ATATGGATTT AGAAAAATTG ACCCGGAACA ATGGGAATTT GCCAATGATG ATTTTGTAAG AGGGCAACCT CATCTTATGA
AGAACATTCA TAGACGGAAG CCGGTTCATA GCCATTCTTT GCAGAATCTC CAAGCACAGG GCCCATTAGG GGAATCAGAA
AGGCAGAGTT TTACTAATGA AATAGAGAAG CTTAAACATG ATAAAGAGCG ACTTCTAGCC GAATTGCAGA AATTTCAGCA
TGAGTGGCAG ACATATGAGA TACAAGTACA TTGCTCAAAC GATAGGTTGG AAAAGTTAGA ACAAAAGCAA CACAAGATGG
TTTCTTCGGT TTCTCACGTA TTGCAGAAAC CTGTGATTGC TGTAAATATC TTGCCTCTGA CAGAAACTAT GGATAGAAAA
CGAAGGTTAC CGAGAAGTGG CCACTACTAT GAAGAAGCTA GTATTGAAGA TGCTATTGAA ACTTCTCAAA TGTTACCAAG
AGAAAATGGA GATAATACCA CTGTCTTGAC ATTAAATGTG GATCGATTGG ATCAGCTTGA ATCATCCGTG GCATTTTGGG
AGGCTATTGC ACATGATATT GGAGACAACT TCGCCCAAAT TCAGTCAAAC ATGGATGTTG ATGAATCTAG AAGTTGTGCT
GATAGTCCAT CCATATCTTG TGCCCAATTA GATGTTGAAA TTCGGCCTAA ATCATCTGGA ATTGATATGA ACTCTGAGCC
AACTGTAGCT GCTGTCCCAG AGCCAGTTGC ATCAAAAGAT CAACCTGCAG GAATCACTGT CGCAGCGACT GGAGTTAATG
ATGTATTCTG GGAACAGTTC TTGACAGAGG ATCCTGGGGC ATCAGAAACA CAGGAAGTGC AGTCAGAAAG AAAGGATTCT
GATGGCAGAA AGAATGAAGG AAAACCCAAT GACCTTAGCA AATTTTGGTG GAATATACGG AGTGCAAATA CTCATTCAGA
ACCGATGGGG CATGTTGGTC AGGCAGAGAA AACTTAGTGG CAATAGATTA TTCTTCTTGC TTGTACTTCT GTACAATCAC
ATGTAATAAA TATAGGTTTG CATGGTTTTT TTATTTTGTC TACAATAAAT ACGTGTTCCT TATTTTGAAT AGGATGCATC
CTCCATTGAT TCGTTTCTGA TCACGGTTTC TTCGAGATCT ATTATACCTG TTCTGAACTG TGGTTGGTTC ATGCTTTTAA
ATTGTCGATC ATGTCACGCA TCTTCAGTAC TGCATTGTAC TGCTGCTAC

[show][hide][copy]CDS

>Vigan.01G108100.01
ATGGATGAGG CACTGGGTAG TTCATGTTCC CTGCCCCCTT TCCTGGCGAA GACTTATGAG ATGGTTGATG ATCCTTCCAC
GAATTCAATT GTTTCGTGGA GTGCCTCTAG TAAAAGTTTC GTTGTGTGGA ATCCTCCAGA ATTTGCTAGG GATTTGCTGC
CTAGATTCTT TAAGCACAAC AATTTCTCAA GTTTCATCAG GCAGCTCAAC ACATATGGAT TTAGAAAAAT TGACCCGGAA
CAATGGGAAT TTGCCAATGA TGATTTTGTA AGAGGGCAAC CTCATCTTAT GAAGAACATT CATAGACGGA AGCCGGTTCA
TAGCCATTCT TTGCAGAATC TCCAAGCACA GGGCCCATTA GGGGAATCAG AAAGGCAGAG TTTTACTAAT GAAATAGAGA
AGCTTAAACA TGATAAAGAG CGACTTCTAG CCGAATTGCA GAAATTTCAG CATGAGTGGC AGACATATGA GATACAAGTA
CATTGCTCAA ACGATAGGTT GGAAAAGTTA GAACAAAAGC AACACAAGAT GGTTTCTTCG GTTTCTCACG TATTGCAGAA
ACCTGTGATT GCTGTAAATA TCTTGCCTCT GACAGAAACT ATGGATAGAA AACGAAGGTT ACCGAGAAGT GGCCACTACT
ATGAAGAAGC TAGTATTGAA GATGCTATTG AAACTTCTCA AATGTTACCA AGAGAAAATG GAGATAATAC CACTGTCTTG
ACATTAAATG TGGATCGATT GGATCAGCTT GAATCATCCG TGGCATTTTG GGAGGCTATT GCACATGATA TTGGAGACAA
CTTCGCCCAA ATTCAGTCAA ACATGGATGT TGATGAATCT AGAAGTTGTG CTGATAGTCC ATCCATATCT TGTGCCCAAT
TAGATGTTGA AATTCGGCCT AAATCATCTG GAATTGATAT GAACTCTGAG CCAACTGTAG CTGCTGTCCC AGAGCCAGTT
GCATCAAAAG ATCAACCTGC AGGAATCACT GTCGCAGCGA CTGGAGTTAA TGATGTATTC TGGGAACAGT TCTTGACAGA
GGATCCTGGG GCATCAGAAA CACAGGAAGT GCAGTCAGAA AGAAAGGATT CTGATGGCAG AAAGAATGAA GGAAAACCCA
ATGACCTTAG CAAATTTTGG TGGAATATAC GGAGTGCAAA TACTCATTCA GAACCGATGG GGCATGTTGG TCAGGCAGAG
AAAACTTAG

[show][hide][copy]PROTEIN

>Vigan.01G108100.01
MDEALGSSCS LPPFLAKTYE MVDDPSTNSI VSWSASSKSF VVWNPPEFAR DLLPRFFKHN NFSSFIRQLN TYGFRKIDPE
QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPL GESERQSFTN EIEKLKHDKE RLLAELQKFQ HEWQTYEIQV
HCSNDRLEKL EQKQHKMVSS VSHVLQKPVI AVNILPLTET MDRKRRLPRS GHYYEEASIE DAIETSQMLP RENGDNTTVL
TLNVDRLDQL ESSVAFWEAI AHDIGDNFAQ IQSNMDVDES RSCADSPSIS CAQLDVEIRP KSSGIDMNSE PTVAAVPEPV
ASKDQPAGIT VAATGVNDVF WEQFLTEDPG ASETQEVQSE RKDSDGRKNE GKPNDLSKFW WNIRSANTHS EPMGHVGQAE
KT*